Locus 5536

Sequence ID 3L_DroMel_CAF1
Location 15,197,609 – 15,197,705
Length 96
Max. P 0.557969
window8749

overview

Window 9

Location 15,197,609 – 15,197,705
Length 96
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -29.92
Consensus MFE -14.06
Energy contribution -14.53
Covariance contribution 0.47
Combinations/Pair 1.26
Mean z-score -1.85
Structure conservation index 0.47
SVM decision value 0.05
SVM RNA-class probability 0.557969
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15197609 96 - 23771897
AGUAUC-----CGUAACCGUAAACGAGGGGCGUUUCUGCCAGCAUUGAUUUGAUUUGAUUAGAUU-----AGUUGAGUUUAU--GUCUAUAGCCUGCGGAGUUG-GGGG
....((-----((...(((((..(...((((((....((((((..(((((((((...))))))))-----))))).))..))--))))...)..)))))...))-)).. ( -24.10)
>DroPse_CAF1 76119 108 - 1
AGAAUCGGUAACGUAACCGUAUACGAGAGGCGGUCCUACCAGCAUUGAUUUGAUUUGAUUAGAUUAGAUUAGUCGAGUCGAGUCGGGUGCAGUUGGGGGAAGUU-GAGG
........((((....((((...(....)))))((((.(((((.((((((((((((((((((......)))))))))))))))))).....))))))))).)))-)... ( -33.80)
>DroEre_CAF1 87381 95 - 1
AGGGUC-----CGUAACCGUAAACGAG-GGCGUUUCUGCCAGCAUUGAUUUGAUUUGAUUAGAUU-----AGUCGAGUUUAU--GUCUAUAGCUGGCGGAGUUG-AGGG
...(((-----(.....((....)).)-)))..((((((((((((.(((..((((((((((...)-----)))))))))...--))).)).))))))))))...-.... ( -31.20)
>DroYak_CAF1 91252 96 - 1
AGGAUC-----CGUAACCGUAUACGAGGGGCGUUUCUGCCAGCAUUGAUUUGAUUUGAUUAGAUU-----AGUCGAGUUUAU--GUCUAUAGCUGGCGGAGUUG-GGGG
....((-----(((..(((....)).)..))..((((((((((((.(((..((((((((((...)-----)))))))))...--))).)).))))))))))..)-)).. ( -32.50)
>DroAna_CAF1 82165 90 - 1
GGGAUU-----UGUAAUCCUAUACAAGAGGCGGUCCUGCCGGCAUUGAUUUGAUUUGAUUAGAUU-----AGUCGAGUGUAU-------UGGCC--CGGAGGUACGGUU
(((((.-----....)))))........(((.(((((.((((...(((((((((...))))))))-----)(((((.....)-------)))))--)))))).)).))) ( -24.10)
>DroPer_CAF1 76522 108 - 1
AGAAUCGGUAACGUAACCGUAUACGAGAGGCGGUCCUACCAGCAUUGAUUUGAUUUGAUUAGAUUAGAUUAGUCGAGUCGAGUCGGGUGCAGUUGGGGGAAGUU-GAGG
........((((....((((...(....)))))((((.(((((.((((((((((((((((((......)))))))))))))))))).....))))))))).)))-)... ( -33.80)
>consensus
AGGAUC_____CGUAACCGUAUACGAGAGGCGGUCCUGCCAGCAUUGAUUUGAUUUGAUUAGAUU_____AGUCGAGUUUAU__GUCUAUAGCUGGCGGAGGUG_GGGG
...........(((..(((....)).)..)))...((((((((........(((((((((..........)))))))))............)))))))).......... (-14.06 = -14.53 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:41 2006