Locus 5535

Sequence ID 3L_DroMel_CAF1
Location 15,197,227 – 15,197,322
Length 95
Max. P 0.854881
window8748

overview

Window 8

Location 15,197,227 – 15,197,322
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -29.52
Consensus MFE -23.53
Energy contribution -23.62
Covariance contribution 0.09
Combinations/Pair 1.13
Mean z-score -2.91
Structure conservation index 0.80
SVM decision value 0.80
SVM RNA-class probability 0.854881
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15197227 95 + 23771897
UCCUUAUCUAUUCCAUUUGGAAGCCACUCUCGAGGGUUUCCUUUCUCCAUUCGCCGGGGGCGUCCCUCAAUUCGGUCAUUGUCUCCGG-ACGA-AUA
..................(((((((.((....))))))))).......((((((((((((((.((........))....)))))))))-.)))-)). ( -32.30)
>DroSec_CAF1 86691 96 + 1
UCCUUAUCUAUUCAAUUUGGUAGCCACUCUCAAGGGUUUCCUUUCUCCAUUCGCCGGGGGCGUCCCUCAAUUCGGUCAUUGUCUCCGGUACGA-AUA
........(((((.....((.((((.((....)))))).))...........((((((((((.((........))....))))))))))..))-))) ( -25.70)
>DroSim_CAF1 92151 96 + 1
UCCUUAUCUAUUCAAUUUGGAAGCCACUCUCAAGGGUUUCCUUUCUCCAUUCGCCGGGGGCGUCCCUCAAUUCGGUCAUUGUCUCCGGUACGA-AUA
........(((((.....(((((((.((....)))))))))...........((((((((((.((........))....))))))))))..))-))) ( -30.10)
>DroEre_CAF1 86999 95 + 1
UCCUUAUCUAUUCCGUUUGGAAGCCACUCUCAAGGGUUUCCUUUCUUCAUUCGCCGGAGGCGUUCCUCAAGACGGUCAUUGUCUCCGG-ACGA-AUA
..................(((((((.((....))))))))).......((((((((((((((..((.......))....)))))))))-.)))-)). ( -32.70)
>DroYak_CAF1 90870 95 + 1
UCCUUAUCUUCUCCAUUUGGAAGCCACUCUCAAGGGUUUCCUUUCUCCGUUCGCCGGGGGCGUCCCUCAAGGCGGUCAUUGUCUCCGG-ACGA-AUA
..................(((((((.((....))))))))).......((((((((((((((.(((.....).))....)))))))))-.)))-)). ( -32.00)
>DroAna_CAF1 81756 96 + 1
UCCUUAACUAUUCCAUUCGGCAGCUACUCUCAAGGGUUUCCUUUUACCAUUCGCCGGGGGCGUCCCUCAAAGCGGUCAUUGUCUUCGG-ACAAUAAA
..................(((.(((.........(((........))).......(((((...)))))..))).)))((((((....)-)))))... ( -24.30)
>consensus
UCCUUAUCUAUUCCAUUUGGAAGCCACUCUCAAGGGUUUCCUUUCUCCAUUCGCCGGGGGCGUCCCUCAAUUCGGUCAUUGUCUCCGG_ACGA_AUA
..................(((((((.((....))))))))).........((((((((((((..((.......))....)))))))))..))).... (-23.53 = -23.62 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:40 2006