Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,189,899 – 15,189,992 |
Length | 93 |
Max. P | 0.889384 |
Location | 15,189,899 – 15,189,992 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -26.61 |
Consensus MFE | -13.36 |
Energy contribution | -16.67 |
Covariance contribution | 3.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.69 |
Structure conservation index | 0.50 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15189899 93 - 23771897 GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA--AAUA ((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....--.... ( -31.80) >DroSec_CAF1 79471 91 - 1 GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAACC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA----UA ((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....----.. ( -31.80) >DroEre_CAF1 79427 93 - 1 GCUGUCAGAGCCCUGAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--CCGAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCCGAGA--AAUA ((((..(.(((((...(((((.(((((..((((---------(((((.........--))))))))))))))...)))))..))))).)..)))).....--.... ( -28.70) >DroYak_CAF1 82502 93 - 1 GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA---------UUUGGUUCUGAGCC--AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCCGAGA--AAUA ((((..(.(((((...(((((...(((((((((---------(....(((((...)--))))..)))))))))).)))))..))))).)..)))).....--.... ( -30.90) >DroAna_CAF1 74296 91 - 1 GCUGUCAGAGGCCUAAAGGAAAAAUUAAUCAUA---------UUUGAUUCUGAGCUGGAGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGG----GA--AAGA .(((.....((((((.(((((...(((((((((---------(....((((.....))))....)))))))))).))))).))))))....)))----..--.... ( -23.50) >DroPer_CAF1 68889 90 - 1 GCUGUCAGAACCCUCAAAAAAUAAUUUAUCAUACCACAUAUUUUUGAUUCUGAGCU--AGAAAUAU-------------UGUGG-CAAUGCACACAGAUACAAACU ((..((((((...(((((((....................))))))))))))))).--.......(-------------(((((-(...)).)))))......... ( -12.95) >consensus GCUGUCAGAGCCCUAAAGGAAAAAUUAAUCAUA_________UUUGGUUCUGAGCC__AGAAAUAUGUGGUUGAAUUCUUGUGGGCUGUUCCGGCAGAGA__AAUA ((((..(.(((((...(((((...(((((((((............(((.....))).........))))))))).)))))..))))).)..))))........... (-13.36 = -16.67 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:34 2006