Locus 5531

Sequence ID 3L_DroMel_CAF1
Location 15,189,276 – 15,189,384
Length 108
Max. P 0.997298
window8740

overview

Window 0

Location 15,189,276 – 15,189,384
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 79.95
Mean single sequence MFE -24.64
Consensus MFE -16.25
Energy contribution -15.81
Covariance contribution -0.44
Combinations/Pair 1.36
Mean z-score -3.08
Structure conservation index 0.66
SVM decision value 2.83
SVM RNA-class probability 0.997298
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15189276 108 - 23771897
CUGUACCUUUAUGACGC--ACAUAAAGCAAUUCGACCAAUAUCCAUACUGAUCCCAUACUAAUCAUCUCGGUCUGGGAAUUCAUACACCCCAGCAGGUACAGACAUGA-AC
(((((((((((((....--.))))))((.....((((................................))))((((...........)))))).)))))))......-.. ( -23.05)
>DroSec_CAF1 78838 108 - 1
AUGUACCUUUAUGACGC--ACAUAAAGCAAUCCGACCAAUAUCCAUACUGAUCCCAUACUAAUCAUCUCGGUCUGGGAAUUCAUACACCCCAGCAGGUACAGAGAUAA-AC
.((((((((((((....--.))))))((.....((((................................))))((((...........)))))).)))))).......-.. ( -20.45)
>DroEre_CAF1 78820 108 - 1
CUGUACCUUUAUGACAA--CCAUAAAGCAAUCCGACCAAUAUCCGUGCUGAUCCCCUACUAAUCAGCUCGGUCUGGGAAUUUAUACACCCCAGCAGGUACAGAGAUAA-AC
(((((((((((((....--.))))))((..............(((.((((((.........)))))).)))..((((...........)))))).)))))))......-.. ( -31.90)
>DroYak_CAF1 81883 108 - 1
CUGUACCUUUAUGACAC--ACAUAAAGCAAUCCGACCAGUAUCCGCACUGAUCCCAUACUAAUCAUCUUGGUCUGGGAACUUAUACACCCCAGCAGGUACAGAGAUAA-AC
(((((((((((((....--.))))))((........((((......)))).(((((.(((((.....))))).)))))..............)).)))))))......-.. ( -29.50)
>DroAna_CAF1 73718 98 - 1
UCUCACUUUUAUGACACACACAUAAAGUAAUCCGACAAAUCUCCAUACUAAUCCCUUACUGAUCACUUUGGUCGGGAAUCUUAGAA-------------AGGAGACAAAAC
....(((((.(((.......))))))))...........(((((...((((((((..((..(.....)..)).))))...))))..-------------.)))))...... ( -18.30)
>consensus
CUGUACCUUUAUGACAC__ACAUAAAGCAAUCCGACCAAUAUCCAUACUGAUCCCAUACUAAUCAUCUCGGUCUGGGAAUUUAUACACCCCAGCAGGUACAGAGAUAA_AC
(((((((((((((.......))))))...............((((.(((((................))))).))))..................)))))))......... (-16.25 = -15.81 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:33 2006