Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,580,414 – 1,580,517 |
Length | 103 |
Max. P | 0.661155 |
Location | 1,580,414 – 1,580,517 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -37.03 |
Consensus MFE | -32.12 |
Energy contribution | -32.10 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.87 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1580414 103 - 23771897 UUAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAACCUG ((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -33.00) >DroSec_CAF1 24605 103 - 1 UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAGCUG ((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20) >DroSim_CAF1 24978 103 - 1 UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAGCUG ((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20) >DroEre_CAF1 31767 103 - 1 UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCAAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGAAUCUG ((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -35.20) >DroYak_CAF1 25713 103 - 1 UCAGCGAGGAUUCAUCCAUUCCCGAUCUGCUGAAACUGGAGGCAAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC------------CUGCACCUG ((((((.(((((((((((..(..(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))..------------......... ( -34.10) >DroAna_CAF1 33255 115 - 1 UCAGCGACGACUCAUCCAUUCCGGAGCGACUGAAGCUGGAGGCCAGACUGGAGUCGGCGCUGAGAUCGGUCUGGAUGUAGUCCACCUGCUGGCCAGCCGGCUGAUGCUGGCCCUG ((((((..((((((((((..((((((((.((((..(..(........)..)..))))))))....))))..)))))).))))....))))))...((((((....)))))).... ( -49.50) >consensus UCAGCGAGGAUUCAUCCAUUCCCGAUCUACUGAAACUGGAGGCCAGACUCGAGUCCGCACUGAGAUCCGUUUGGAUGUAGUCCACCUGCUGACC____________CUGAACCUG ((((((.(((((((((((...(.(((((..((..(((.(((......))).)))...))...))))).)..)))))).)))))...))))))....................... (-32.12 = -32.10 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:11 2006