Locus 5528

Sequence ID 3L_DroMel_CAF1
Location 15,180,384 – 15,180,488
Length 104
Max. P 0.630529
window8734

overview

Window 4

Location 15,180,384 – 15,180,488
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 89.74
Mean single sequence MFE -32.25
Consensus MFE -22.86
Energy contribution -23.93
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -1.90
Structure conservation index 0.71
SVM decision value 0.20
SVM RNA-class probability 0.630529
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15180384 104 - 23771897
CCCUCGGAUCUCGGAUCUCUCGGGGAUCGGGAUGAGGGCUGAGGGGAGCUGCACUUAAAAUAAUAUGUGUAGCAAGUCAUUACAAGUAUUGUAAAGGGUUAAGU
(((((((..(((((((((.....)))))....))))..)))))))..(((((((............)))))))((.((.(((((.....))))).)).)).... ( -36.60)
>DroSec_CAF1 69998 104 - 1
CCCUCGGAUCUCGGAUCUCUCGGGGAUCGGGAUGAGGGCUAAGGGGAGCUGCACUUAAAAUAAUAUGUGUAGCACGUCAUUACAAGUAUUGUAAAAGGUUAAGU
(((((..((((((.((((.....)))))))))))))))....((.(.(((((((............))))))).).)).(((((.....))))).......... ( -32.40)
>DroSim_CAF1 71407 104 - 1
CCCUCGGAUCUCGGAUCUCUCGGGGAUCGGGAUGAGGGCUAAGGGGAGCUGCACUUAAAAUAAUAUGUGUAGCAAGUCAUUACAAGUAUUGUAAAAGGUUAAGU
(((((..((((((.((((.....))))))))))))))).........(((((((............)))))))......(((((.....))))).......... ( -30.30)
>DroYak_CAF1 72888 100 - 1
CCCUCGGAUCUCGGAUCGCUCUGGGAUCGGAAAGAGGGCCAAGGGGCGGUGCACUUAAAAAAAG---GGUAGCCAGCCAUUACAAUUAUUGCA-AGGGUUAAGU
(((((.(((((((((....))))))))).))....(((((....)))(((..((((.......)---))).)))..))...............-.)))...... ( -29.70)
>consensus
CCCUCGGAUCUCGGAUCUCUCGGGGAUCGGGAUGAGGGCUAAGGGGAGCUGCACUUAAAAUAAUAUGUGUAGCAAGUCAUUACAAGUAUUGUAAAAGGUUAAGU
((((((((((((.((....)).))))))....))))))((.......(((((((............)))))))......(((((.....))))).))....... (-22.86 = -23.93 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:27 2006