Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,178,429 – 15,178,519 |
Length | 90 |
Max. P | 0.648732 |
Location | 15,178,429 – 15,178,519 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -12.24 |
Energy contribution | -13.02 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.10 |
Mean z-score | -2.30 |
Structure conservation index | 0.50 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15178429 90 - 23771897 UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUC---------------------C---CCCCAGCAA-- ..........((((((..........(((((......)))))...((.((.(((.((((((.....)))))).))).)).---------------------)---)))))))..-- ( -20.60) >DroVir_CAF1 58195 107 - 1 UCUCACACGCGCAGAGACGUACAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUGCUCUGGCACCAC--------A-CGGCCACAACGUCC ...............(((((......(((((......)))))...(((((.(((.((((((.....)))))).))).))))).((((.....--------.-..))))..))))). ( -22.30) >DroPse_CAF1 59046 114 - 1 UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCUACCAGGGCCAGAACCCAGUCCCAGGCCCAGCAA-- ........((.(((((((.....((.(((((......)))))..((((...(((.((((((.....)))))).))).)))).)).(((......))).))))))))).......-- ( -31.00) >DroGri_CAF1 63597 101 - 1 UCUCACACGCGCAGAGACGUACAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUGC-CUGGCUCC------------CUGCCACAACGU-- ........(.((((.((.((......(((((......)))))..((((((.(((.((((((.....)))))).))).))))-)).)))).------------))))).......-- ( -23.80) >DroAna_CAF1 64680 96 - 1 UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCGACCA-------------G--U---CCCCGGUAA-- ..........((((((((..((....(((((......)))))...(((...(((.((((((.....)))))).))).)))))...-------------)--)---.))))))..-- ( -19.00) >DroPer_CAF1 59186 114 - 1 UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCUACCAGGGCCAGAACCCAGUCCCAGGCCCAGCAA-- ........((.(((((((.....((.(((((......)))))..((((...(((.((((((.....)))))).))).)))).)).(((......))).))))))))).......-- ( -31.00) >consensus UCUCACACGCGCUGGGACGUUCAGGAAUUGAAAAAUAUCAAUAAAGGCAUAUGAAUUGUUACCCAAUAAUAAAUCAAGUCCACCAG__CC___________CC_GCCCCAGCAA__ ..........((((((..........(((((......))))).........(((.((((((.....)))))).)))..............................)))))).... (-12.24 = -13.02 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:26 2006