Locus 5524

Sequence ID 3L_DroMel_CAF1
Location 15,169,634 – 15,169,737
Length 103
Max. P 0.894046
window8726

overview

Window 6

Location 15,169,634 – 15,169,737
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -31.94
Consensus MFE -27.24
Energy contribution -27.84
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 0.98
SVM RNA-class probability 0.894046
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15169634 103 + 23771897
GGGUAAUUAAAGCGUAAUUAAUGGUCGGGCUUCCGAUUCGAUAUGGAGAGCCUGCCU-UCCGCCUCCUUGGGCGGCAUCUGUAUUUUGGUUUUUGUUUUUUCGU
........((((((.((((((.((.((((((((((........)))).)))))))).-.((((((....))))))..........))))))..))))))..... ( -28.00)
>DroSec_CAF1 59331 99 + 1
GGGUAAUUAAAGCGUAAUUAAUGGUCGGGCUACCGAUUCGAUAUGGGGAGCCUGCCUUUCCGCCUCCUUGGGCGGCAUCUGUAUUUUGGUUU-----UUUUCGU
(((.((((((((..((......((.((((((.((.((.....)).)).))))))))...((((((....))))))....))..)))))))).-----..))).. ( -29.20)
>DroSim_CAF1 60620 99 + 1
GGGUAAUUAAAGCAUAAUUAAUGGUCGGGCUACCGAUUCGAUAUGGGGAGCCUGCCU-UCCGCCUCCUUGGGCGGCAUAUGUAUUUUGGUUUU----UUUUCGU
(((.((((((((((((......((.((((((.((.((.....)).)).)))))))).-.((((((....))))))..)))))..)))))))..----..))).. ( -30.50)
>DroEre_CAF1 60352 102 + 1
GGGUAAUUAAAGCGUAAUUAAUGGUCGGGCUUCCGAUUCGAUAUGGGGAGCCUGCCU-UCCGCCUCCUUGGGCGGCAUCUGUAUUU-GGUUUUUUCGUAUUCGU
(((((...(((((.........((.(((((((((.((.....)).))))))))))).-.((((((....))))))...........-.)))))....))))).. ( -35.30)
>DroYak_CAF1 61270 87 + 1
GGGUAAUUAAAGCGUAAUUAAUGGUCGGGCUUCCGAUUCGAUAUGGGGAGCCUGCCU-GCCGCCUCCUUGGGCGGCAUCUGUAUUC-GG---------------
(((((.................((.(((((((((.((.....)).)))))))))))(-(((((((....))))))))....)))))-..--------------- ( -36.70)
>consensus
GGGUAAUUAAAGCGUAAUUAAUGGUCGGGCUUCCGAUUCGAUAUGGGGAGCCUGCCU_UCCGCCUCCUUGGGCGGCAUCUGUAUUUUGGUUUU____UUUUCGU
...((((((.....))))))..((.(((((((((.((.....)).)))))))))))...((((((....))))))............................. (-27.24 = -27.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:20 2006