Locus 5523

Sequence ID 3L_DroMel_CAF1
Location 15,168,368 – 15,168,458
Length 90
Max. P 0.855089
window8725

overview

Window 5

Location 15,168,368 – 15,168,458
Length 90
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 71.94
Mean single sequence MFE -16.59
Consensus MFE -7.64
Energy contribution -8.36
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.46
SVM decision value 0.80
SVM RNA-class probability 0.855089
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15168368 90 - 23771897
AUUUUUUUUUCAAA--------------AUAU-UAUCCACCUGCUUAUGGGCUGGGGAAUCUCUGUUUGGCUACUUUCCUAGUCUAAUCUAGCUAGUUUUUCCUA
..............--------------....-.....((..(((..((((((((((((...((....))....))))))))))))....)))..))........ ( -16.70)
>DroSec_CAF1 58051 90 - 1
AUAUUUUUUCCAAA--------------AUAU-UAUCCACCUGCUUAUGGGCUGGAGAACCUCUGUCUGGCUACUUUCCUAGUCUAAGCUAGCUAGUUUUUCCUA
(((((((....)))--------------))))-..(((((((......))).))))(((...(((.(((((((((.....)))...)))))).)))...)))... ( -18.10)
>DroSim_CAF1 59346 90 - 1
AUUUUUUUUCCAAA--------------AUAU-UAUCCACCUGCUUAUGGGCUGGGUAACCUCUGUCUGGCUAUUUUCCUAGUCUAAUCUAGCUAGUUUUUCCUA
..............--------------...(-(((((((((......))).))))))).......(((((((..((........))..)))))))......... ( -16.50)
>DroEre_CAF1 58787 69 - 1
----UUUUACCUAU------------------------A---UAUUACG-GCUGGGGAUCCUCUGUCUAGCUACUUUCCU-GGCCAAUCUAGCUAGUU---CCUA
----..........------------------------.---......(-((..((((.................)))).-.))).............---.... ( -13.03)
>DroYak_CAF1 59263 100 - 1
----CUUUACCAAUCACAUUUUUCCCCAUUAUACAUAUACCUGAUUUUG-GAUUGGGAACCUCUGUCUAGCUACUUUCCUAGGCGAAUCUAGCUAGUUUUCCCUA
----.....................(((..((.((......))))..))-)...(((((.......(((((((..(((......)))..)))))))..))))).. ( -18.60)
>consensus
AU_UUUUUUCCAAA______________AUAU_UAUCCACCUGCUUAUGGGCUGGGGAACCUCUGUCUGGCUACUUUCCUAGUCUAAUCUAGCUAGUUUUUCCUA
....................................................(((((((.......(((((((..((........))..)))))))..))))))) ( -7.64 =  -8.36 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:19 2006