| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,162,884 – 15,162,991 |
| Length | 107 |
| Max. P | 0.514246 |
| Location | 15,162,884 – 15,162,991 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -8.83 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15162884 107 - 23771897 --UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUCAAAAAAAAAAAAUAAAUAAAGUAAAGAUACAAAACCAAA---AAACAGAACC---AACAUUUU --...(((((((..((((.......)))))))))))........(((((((.........................)))))))........---..........---........ ( -13.91) >DroSec_CAF1 52598 104 - 1 --UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUCAAAAAAA--AAA-AAAAAAAGUAAAGAUACAAAACCAAA---AAACAGAACC---AACAUUUU --...(((((((..((((.......)))))))))))........(((((((........--...-...........)))))))........---..........---........ ( -14.05) >DroEre_CAF1 53644 99 - 1 --UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUCAAAAAAAAGG--------AAAGAAAAAUACAAAACCAAA---AAACAGAACC---AACAUUUU --...(((((((..((((.......)))))))))))........(((((.((..........--------...))...)))))........---..........---........ ( -9.72) >DroWil_CAF1 62667 101 - 1 UAUAUUAUGCUGCCACAUUGCGGAUAUGUCAGCA-AUGAACAUAUGUAACUCAAAAUAUA-------------CAAAAACACAAAAACAAAAAAAAAGAAAACCGAAAACAUUUU ((((((.((((((......))))((((((((...-.)).))))))......)).))))))-------------.......................................... ( -11.70) >DroYak_CAF1 53943 97 - 1 --UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUCAAAAAAAA----------AUGUAAAGAUACAAAACCAAA---AAACAGAACC---AACAUUUU --...(((((((..((((.......)))))))))))........(((((((.........----------......)))))))........---..........---........ ( -14.46) >DroAna_CAF1 48881 92 - 1 --UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUUAAAAAAAAA--------------AUAAUACGAAUGAAAG---AUACAGAACC---AACAUUU- --...(((((((..((((.......)))))))))))........((((((((.........--------------.............)))---))))).....---.......- ( -15.25) >consensus __UAUUAUGCUGCCACAUUGCGGAUAUGUCAGCAUAUGAACAUAUGUAUCUCAAAAAAAA__________AAGUAAAAAUACAAAACCAAA___AAACAGAACC___AACAUUUU .....(((((((..((((.......)))))))))))............................................................................... ( -8.83 = -9.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:16 2006