Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,159,893 – 15,160,000 |
Length | 107 |
Max. P | 0.562648 |
Location | 15,159,893 – 15,160,000 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 86.28 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -16.58 |
Energy contribution | -16.54 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.75 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15159893 107 - 23771897 ACUGGGUAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCC--CCCUCCCCCUGCCACGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...(((.((------(((....))).)).))).............................--.......(..((.((((..(((((........)))))..)))).))..)... ( -21.80) >DroSec_CAF1 49494 109 - 1 ACUGGGCAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUACCCCCCUGCUCCUGUCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...((((((------.(((.((....)).)))..............................(((..((....))..))).................))))))((((....)))) ( -24.30) >DroSim_CAF1 50890 109 - 1 ACUGGGCAC------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCCCUGUCCCUGCCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...(((.((------(((....))).)).)))...................................(((...((.((((..(((((........))))).))))..))..))). ( -23.90) >DroEre_CAF1 50799 93 - 1 ACUGGGUAG------UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCC----------------UCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...(((..(------(((....))))...))).................................----------------.(((((........)))))...((((....)))) ( -17.50) >DroYak_CAF1 51148 109 - 1 ACUGGGUACUGUGACUGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCUCCCCCC--C----UUCGGGAUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...((((((.((((..(((.((....)).)))............................((((...--.----...))))))))((........))))))))((((....)))) ( -23.40) >consensus ACUGGGUAC______UGGGUACCCAUGUUCCCUUAUUUUAUUUCUAUUUCUAUUUAUUUCCCCCCCU__CCCUGCCCGGGUUCAUGUUUUACAAUGCGUGCCCCGUCGUUCGACG ...((((((.......(((.((....)).)))..................................................(((........))).))))))((((....)))) (-16.58 = -16.54 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006