| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,579,915 – 1,580,035 |
| Length | 120 |
| Max. P | 0.664403 |
| Location | 1,579,915 – 1,580,035 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.72 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -32.41 |
| Energy contribution | -32.97 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1579915 120 + 23771897 CCAGCUGACGAGCAGCUCCAAUCGUACCAGCAGCGUAAUGGAGACCAUUAUCGAGGCCAAGGAAACGGCCUCGCCCAAGAAGCAGGUUACACUCAGCAAUGGCCAUACCAUGGAAUCCUU ((.(((((.(((...))).....(((((.((...(((((((...)))))))(((((((..(....))))))))........)).)).)))..))))).((((.....))))))....... ( -36.80) >DroSec_CAF1 24106 120 + 1 UCAGCUGACCAGCAGCUCCAAUCGCACCAGCAGCGUAAUGGAGACCAUAAUCGAGGCCAAGGAGACGGCCUCGCCCAAGAAGCAGGUUACACUGAGCAAUGGGCAUACCAUGGAAUCCUU ...(((....)))..(((((..(((.......)))...))))).((((....((((((..(....)))))))(((((.....(((......))).....))))).....))))....... ( -44.00) >DroSim_CAF1 24479 120 + 1 UCAGCUGACCAGCAGCUCCAAUCGCACCAGCAGCGUAAUGGAGACCAUCAUCGAGGCCAAGGAGACGGCCUCGCCCAAGAAGCAGGUUACACUCAGCAAUGGCCAUACCAUGGAAUCCUU ...(((((((.((..(((((..(((.......)))...)))))........(((((((..(....))))))))........)).))......))))).((((.....))))......... ( -37.10) >DroEre_CAF1 31268 120 + 1 CCAGCUGACCAGCAGCUCCAAUCGCACCAGCAGCGUAAUGGAGACCAUCAUCGAGGCCAAGGAGACGGCCUCGCCCAAGAAGCAGGUUACACUCAGCAAUGGCCAUACCAUGGAAUCCUU ((.(((((((.((..(((((..(((.......)))...)))))........(((((((..(....))))))))........)).))......))))).((((.....))))))....... ( -38.60) >DroYak_CAF1 25214 120 + 1 CCAGCUGACUAGCAGCUCCAAUCGCACCAGCAGCGUAAUGGAGACCAUCAUCGAGGCCAAGGAGACGGCCUCGCCCAAGAAGCAGGUUACACUCAGCAAUGGCCAUACCAUGGAGUCCUU ((.(((((.......(((((..(((.......)))...)))))(((......((((((..(....)))))))((.......)).))).....))))).((((.....))))))....... ( -38.50) >DroAna_CAF1 32735 120 + 1 CCAGCUCAGCAGCAGCUCCAAUCGUACCAGUAGCGUCAUGGAGACCAUCAUCGAAGCCAAGGAGACUGCGUCGCCCAAGAAACAGGUCACUCUCAGCAACGGACACACCAUGGAGUCGCU ..........(((.((((((.........((.((.....((.((((.........((..((....)))).((......))....)))).))....)).))((.....)).)))))).))) ( -27.80) >consensus CCAGCUGACCAGCAGCUCCAAUCGCACCAGCAGCGUAAUGGAGACCAUCAUCGAGGCCAAGGAGACGGCCUCGCCCAAGAAGCAGGUUACACUCAGCAAUGGCCAUACCAUGGAAUCCUU ((.(((((.......(((((..(((.......)))...)))))(((......((((((..(....)))))))((.......)).))).....))))).((((.....))))))....... (-32.41 = -32.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006