| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,156,150 – 15,156,256 |
| Length | 106 |
| Max. P | 0.552510 |
| Location | 15,156,150 – 15,156,256 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 93.40 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -21.12 |
| Energy contribution | -22.32 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15156150 106 + 23771897 UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUUGGAAAAUCCCAAAAAGUGGCUUCUUUGGCGGAAAAACAAGUUUUGCAUAAUUUCCAGAUUGGCUUCACC .....((((((...((((..(((.(((((((((((((((......)))))).........)))))))))...))))))).))).......((.....))...))). ( -24.10) >DroSec_CAF1 45817 106 + 1 UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUUGGAAAAUCCCAAAAAGUGGCUGCUUUGGCGGACAAACAAGUUUUGCAUAAUUUCCAGAUUUGCUUUACA ...(((((.((...((((....((((((((((.((((((......))))))(((....)))))))))))))....)))).)))))))................... ( -26.60) >DroSim_CAF1 47170 106 + 1 UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUUGGAAAAUUCCAAAAAGUGGCUUCUUUGGCGGACAAACAAGUCUUGCAUAAUUUCCAGAUUGGCUUUACC ..(((((.((((.......))))(((((((((((((((((....))))))).........))))))))))..)))))....((.(((((....)))))))...... ( -26.30) >DroEre_CAF1 46963 106 + 1 UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUCGGAAAAUCCCAAAAAGUGGCUUCUUUGGCGGACAAACAUGUUUUGCAUAAUUUCCACAGUGCCUUUAAC .......(((((((((..((((((((((((((.....((((....(((.....))).)))))))))))))..)))))..)))............))))))...... ( -27.10) >DroYak_CAF1 47370 106 + 1 UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUCGGAAAAUCCCAAAAAGUGGCUUCUUUGGCGGACAAACAUGUUUUGCAUAAUUUCCAGAGGGGCUCUAAA (((((.(((.((((((..((((((((((((((.....((((....(((.....))).)))))))))))))..)))))..)))...)))..))).)))))....... ( -29.30) >consensus UCCUUGUGGCAUUCAACUCAUGUGUCUGCCAAGUUUUGGAAAAUCCCAAAAAGUGGCUUCUUUGGCGGACAAACAAGUUUUGCAUAAUUUCCAGAUUGGCUUUACC ...(((((.((...((((....(((((((((((((((((......)))))).........)))))))))))....)))).)))))))................... (-21.12 = -22.32 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:14 2006