Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,155,405 – 15,155,500 |
Length | 95 |
Max. P | 0.599958 |
Location | 15,155,405 – 15,155,500 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -16.17 |
Consensus MFE | -13.02 |
Energy contribution | -12.30 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.22 |
Mean z-score | -1.42 |
Structure conservation index | 0.81 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15155405 95 + 23771897 UAUUCGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUGAACCAAA (((((((((.(...............).))))........((((((((.((((........)))).)))))))).........)))))....... ( -17.66) >DroSec_CAF1 45070 95 + 1 UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA ..(((((((.(...............).))..........((((((((.((((........)))).))))))))......))))).......... ( -15.66) >DroSim_CAF1 46427 95 + 1 UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA ..(((((((.(...............).))..........((((((((.((((........)))).))))))))......))))).......... ( -15.66) >DroEre_CAF1 46225 89 + 1 ------CGCGUUAACAUCAAUUAAUUGAGCAUUAAUCAAGUAUACUCAGUAGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUGAACCAAG ------.(((((((..((((....))))...)))))....((((((((.((((........)))).))))))))))................... ( -16.70) >DroYak_CAF1 46608 95 + 1 UAAAUGCGCGUUAACAUCAAUCAAUUGGGCAUUAAUCAAGUAUACUCGAUGGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUAAACCAAA ..(((((.((...............)).))))).......((((((((.((((........)))).))))))))..................... ( -15.16) >consensus UAUUUGUGCGUUAACAUCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAACCAAA .......((.((((..........))))))..........((((((((.((((........)))).))))))))..................... (-13.02 = -12.30 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:13 2006