Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,148,324 – 15,148,416 |
Length | 92 |
Max. P | 0.612536 |
Location | 15,148,324 – 15,148,416 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 84.86 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -20.19 |
Energy contribution | -21.25 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.20 |
Mean z-score | -1.73 |
Structure conservation index | 0.81 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15148324 92 + 23771897 CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA (.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70) >DroSim_CAF1 39400 92 + 1 CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA (.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70) >DroEre_CAF1 39275 92 + 1 CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUCUCGGCUUUGGCGGAUUA (.((((((..(((((((.....)))))))...(((((((((........)))))))))))).......(((((.....)))))))).).... ( -28.70) >DroYak_CAF1 39455 92 + 1 CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACGUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUAGCGGAUUA ......(((((((((((.....)))))))...(((((((((........)))))))))..........(((((.....))))).)))).... ( -28.80) >DroAna_CAF1 35936 91 + 1 CGGUCAUCGCGCUCGUAAAAUUUAUGACCAUAUACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUGUU-GCUUUCGGGGAUUA .((((((................))))))...(((((((((........)))))))))...((..(..(((((....-)))))..)..)).. ( -22.59) >DroPer_CAF1 35399 78 + 1 ---------CGGUGCUUCGAUUUAUUACCAUA--CACUGAACAACAUAAUUCUCUGUGGAUCUUUCAGAGAUCUUUUUGGCCUGGCUGU--- ---------(((.(((..............((--((..(((........)))..))))((((((...)))))).....)))))).....--- ( -12.10) >consensus CGGUCAUCGCGGUCGUAAAAUUUAUGACCAUACACACUGGACAACAUAAUUCGGUGUGGAUAUUUCAAAGAGCUUUCGGCUUUGGCGGAUUA ......(((((((((((.....)))))))...(((((((((........)))))))))..........(((((.....))))).)))).... (-20.19 = -21.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:12 2006