| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,137,239 – 15,137,340 |
| Length | 101 |
| Max. P | 0.832494 |
| Location | 15,137,239 – 15,137,340 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.96 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15137239 101 - 23771897 UGAAACGUGUUCGAUUAGGCUUACAGCCUUAGUGAGCUUCAGUU-UUCUACACUGAAAA-AAAUUAGUAAAUUCAAUUGUGAGCUUUUAUUGUA------GAACACGCU .....(((((((....((((((((((...(((.((((....)))-).))).(((((...-...)))))........))))))))))........------))))))).. ( -25.60) >DroSec_CAF1 27143 107 - 1 UGAAACGUGUUCGAUUAGGCUUACAGCCUUAGUGAGCUUCAGUU-UUCUACACUGAAAA-AAAUUAAUAGAACCAGAUGUGAGCUUAUAGAAUAAAUGGUAAACAUGGC .......(((((...(((((((((((((.....).))((((((.-......))))))..-.................))))))))))..))))).(((.....)))... ( -22.60) >DroSim_CAF1 28289 95 - 1 UGAAACGUGUUCGAUUAGGCUUACAGCCUUAGUGAGCUUCAGUU-UUC-GCACUGAAAAAAAAAUAAUAGAACCAAUUGUGAGCUUAUAGAAUAAAU------------ .......(((((...(((((((((((((.....).))((((((.-...-..))))))....................))))))))))..)))))...------------ ( -22.50) >DroYak_CAF1 28229 99 - 1 UGAAACGUGUUCGAUUAGGCUUACAGCCUUAGUGGGGUUCGGUUUUUCUGCACUGACGA-AAAA-AAUAAAAACAAUUGUGAGCUUAUUGAAUAAAGGGUG-------- .......((((((((.(((((((((((((.....))))(((((........)))))...-....-............))))))))))))))))).......-------- ( -23.80) >consensus UGAAACGUGUUCGAUUAGGCUUACAGCCUUAGUGAGCUUCAGUU_UUCUACACUGAAAA_AAAAUAAUAAAACCAAUUGUGAGCUUAUAGAAUAAAU___G________ .......(((((...(((((((((((((.....).))((((((........))))))....................))))))))))..)))))............... (-16.92 = -17.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:11 2006