Locus 5515

Sequence ID 3L_DroMel_CAF1
Location 15,135,425 – 15,135,516
Length 91
Max. P 0.647077
window8716

overview

Window 6

Location 15,135,425 – 15,135,516
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.12
Mean single sequence MFE -26.68
Consensus MFE -12.41
Energy contribution -12.69
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -2.44
Structure conservation index 0.47
SVM decision value 0.24
SVM RNA-class probability 0.647077
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15135425 91 + 23771897
AGCUCCUGGCUCCUGGCUCCUUUGAGC--------CGGCCAUCUCCCAUUGCGCAAUAUGCAAAGGAGCGUGUAAUGCUACCGUCUGCACUCCCCAAAU
.((((((((((...(((((....))))--------)))))........(((((.....)))))))))))((((((((....))).)))))......... ( -31.50)
>DroPse_CAF1 23768 88 + 1
A-CGG-------CCAACUGCUUUGAACCAUCGCAUCGGCCCCCUCUCAUUGCACAAUAUGCAAAAGAGCGUGUAAUGCGUCUGUCUGAGUUCCCCC---
.-.((-------((...(((..((...))..)))..))))..(((.((.((((..((((((......))))))..))))..))...))).......--- ( -21.10)
>DroSec_CAF1 25337 91 + 1
AGCUCCUGGCUCCUGGCUCCUUUGAGC--------CGGCCAUCUCCCAUUGCACAAUAUACAAAGGAGCGUGUAAUGCUACCGUCUGCACUCCACAAAU
.((((((((((...(((((....))))--------)))))........(((.........)))))))))(((...(((........)))...))).... ( -28.10)
>DroSim_CAF1 26520 91 + 1
AGCUCCUGGCUCCUGGCUCCUUUGAGC--------CGGCCAUCUCCCAUUGCGCAAUAUGCAAAGGAGCGUGUAAUGCUACCGUCUGCACUCCACAAAU
.((((((((((...(((((....))))--------)))))........(((((.....)))))))))))(((...(((........)))...))).... ( -32.70)
>DroEre_CAF1 25925 84 + 1
AGCUGCU-------GACUCCUUUGAGU--------CGGCCAUUUCCCAUUGCCCAAUAUGCAAAGGAGCGUGUAAUGCUACCGUCUGCACUUCCCCAAU
.((((((-------(((((....))))--------))))......((.((((.......)))).)))))((((((((....))).)))))......... ( -24.60)
>DroYak_CAF1 26356 84 + 1
AGAUCCU-------GGCUCCUUUGAGC--------CGGCCAUCUCCCAUUGCCCAAUAUGCAAAGGAGCGUGUAAUGCUACCGUCUGCACUUCCCAAAU
((((.((-------(((((....))))--------)))..))))....((((.......)))).((((.((((((((....))).)))))))))..... ( -22.10)
>consensus
AGCUCCU_____CUGGCUCCUUUGAGC________CGGCCAUCUCCCAUUGCACAAUAUGCAAAGGAGCGUGUAAUGCUACCGUCUGCACUCCCCAAAU
...............(((((((((............((.......)).............)))))))))((((((((....))).)))))......... (-12.41 = -12.69 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006