Locus 5514

Sequence ID 3L_DroMel_CAF1
Location 15,131,202 – 15,131,297
Length 95
Max. P 0.582320
window8715

overview

Window 5

Location 15,131,202 – 15,131,297
Length 95
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -23.67
Consensus MFE -15.60
Energy contribution -15.47
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.66
SVM decision value 0.10
SVM RNA-class probability 0.582320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15131202 95 - 23771897
GUGCUAUCUAUUUAUACUAUAGAUACGUAAGUAAG----------------------UACAAAAAGCAAGUUCCUCUUGAAU-AUUAUUAUGAAUAAUAGCACUUCCUUGACUAUGGG
(((((((.((((((((.......(((....)))..----------------------.........((((.....))))...-.....)))))))))))))))..((........)). ( -20.20)
>DroSec_CAF1 21092 118 - 1
GUGCUAUCGAUUUAUUCUAUCGAUACGUACAUAAAAAUGUCUUAUUGACGCGUUUCUUACAAAGACCAAGGUCGUCUUGAAAGAUUGGUAUGAAUAAUAGCAGUUCCUUUACUUUUGA
(((((((((((.......))))))).))))........(((.....)))..........(((((((....)))....((((.(((((.(((.....))).)))))..))))..)))). ( -24.00)
>DroSim_CAF1 22251 118 - 1
GUGCUAUCGAUUUAUUCUAUCGAUACGUACAUAAAAGUGUCUUAUUGACGCGUUUCUUACAAAAACCAAGGUCGUCUUGAAUGAUUGGUAUGAAUAAUAGCAGUUCCUUCACUUUUGA
(((((((((((.......))))))).))))......(((((.....)))))........(((((..((((.....))))...(((((.(((.....))).))))).......))))). ( -26.80)
>consensus
GUGCUAUCGAUUUAUUCUAUCGAUACGUACAUAAAA_UGUCUUAUUGACGCGUUUCUUACAAAAACCAAGGUCGUCUUGAAUGAUUGGUAUGAAUAAUAGCAGUUCCUUCACUUUUGA
.((((((((((.......)))))..(((((......(((((.....)))))...............((((.....))))........))))).....)))))................ (-15.60 = -15.47 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:09 2006