Locus 5513

Sequence ID 3L_DroMel_CAF1
Location 15,125,206 – 15,125,326
Length 120
Max. P 0.721673
window8714

overview

Window 4

Location 15,125,206 – 15,125,326
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -39.04
Consensus MFE -28.00
Energy contribution -27.62
Covariance contribution -0.38
Combinations/Pair 1.36
Mean z-score -1.76
Structure conservation index 0.72
SVM decision value 0.40
SVM RNA-class probability 0.721673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15125206 120 + 23771897
ACCUUCAUAGCCCCAAAUCUUUCCAUGAUUGUUGGAGCAUCGACGGCGGCUAAACUCUUGGGCAUUGCUGGUGGCCUUUCCAAAUUAUCCAAAAUGCCGGCCUGCAAUGUUCAGGUGUUG
.......(((((((.((((.......))))((((......)))))).)))))(((.((((((((((((.((((((.(((............))).))).))).)))))))))))).))). ( -41.00)
>DroVir_CAF1 14029 120 + 1
ACCUUCAUAGCGCCCAACCUGUCCAUGAUUGUGGGCGCCUCCACAGCUGCCAAACUGUUGGGCAUUGCUGGCGGCCUGACUAAGCUCUCCAAAAUGCCAGCCUGUAAUGUGCAGGUGCUG
.........(((((((....(((...)))..))))))).....((((.............((((((..(((.(..((.....))..).))).)))))).((((((.....)))))))))) ( -41.20)
>DroGri_CAF1 15232 120 + 1
ACCUUCAUAGCGCCCAAUCUUUCCAUGAUAGUGGGCGCCUCCACUGCAGCCAAGCUCCUGGGCAUUGCCGGCGGCCUGACCAAACUCUCCAAAAUGCCUGCCUGCAAUGUGCAGGUGUUG
.........((((((((((.......)))..)))))))..............(((.((((.(((((((.((((((....................))).))).))))))).)))).))). ( -44.35)
>DroWil_CAF1 15079 120 + 1
ACAUUCAUUGCUCCCAAUCUCUCCAUGAUUGUGGGAGCCUCGACAGCAGCCAAAUUGCUAGGCAUAGCUGGCGGUCUAACCAAAUUAUCCAAAAUGCCAGCCUGUAAUGUUCAGGUUUUG
(((((....(((((((...((.....))...)))))))....((((..(((.........)))...((((((((.....))..(((......)))))))))))))))))).......... ( -33.40)
>DroMoj_CAF1 13765 120 + 1
ACCUUCAUAGCGCCCAACCUGUCCAUGAUUGUAGGCGCCUCAACAGCUGCCAAAUUGUUGGGCAUUGCCGGCGGCCUAACCAAGCUCUCCAAAAUGCCGGCUUGCAAUGUGCAGGUGCUC
((((.(((((((((((((.....((....))..(((((.......)).))).....)))))))...(((((((((........))).........))))))..))..)))).)))).... ( -38.60)
>DroAna_CAF1 14853 120 + 1
ACUUUCAUUGCUCCCAACCUCUCAAUGAUUGUGGGAGCGUCAACGGCCGCCAAGCUUUUGGGAAUUGCAGGAGGUCUCUCCAAGCUUUCCAAAAUGCCCGCCUGCAAUGUUCAAGUUCUG
((((.(((((((((((...((.....))...)))))))......(((.(....(((((((((((..((.((((....))))..))))))))))).))).)))...))))...)))).... ( -35.70)
>consensus
ACCUUCAUAGCGCCCAACCUCUCCAUGAUUGUGGGAGCCUCAACAGCAGCCAAACUGUUGGGCAUUGCUGGCGGCCUAACCAAACUCUCCAAAAUGCCAGCCUGCAAUGUGCAGGUGCUG
.........(((((((...((.....))...)))))))...................(((.(((((((.((((((....................))).))).))))))).)))...... (-28.00 = -27.62 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:08 2006