| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,124,219 – 15,124,317 |
| Length | 98 |
| Max. P | 0.991312 |
| Location | 15,124,219 – 15,124,317 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.62 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.70 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15124219 98 + 23771897 ---------------------UAUUGAAUUUGGUCAAAUUGAUCAAUUAAAAUCCAGUGGAAUAGCCUUAUGGUAUUCUUUAAAUGAAUACCCUAUAUAUUUCAUGCUAAUACUUAGUA ---------------------........((((((.....))))))..........((((((((....((.(((((((.......))))))).))..))))))))((((.....)))). ( -20.80) >DroSim_CAF1 14939 119 + 1 AUGCAUUGAUAUUUUGUAAUGUAUUGAAUUUUGUAAAAAUUAUCAAUUAAAAUCCAGUGGAAUAGCCUUAUGGUAUUCUUUGAAGGAGUACCCUAUAUAUUUCACGCUAAUAUUUAGUA ..(((((((((((((((((.((.....)).))))))))..))))))).........((((((((....((.((((((((.....)))))))).))..))))))))))............ ( -24.10) >DroEre_CAF1 14851 97 + 1 ---------------------AAUCGAAUUUUGUUAAAUUUAACAAUUUAAAUUCUGUGGAACAAACUUAAGGUAUUCUUUAAAGGAAUACCCUCUAUAUU-UACGCUAUUGGUUAGUA ---------------------....(((((((((((....)))))....))))))((((((..........((((((((.....)))))))).))))))..-...((((.....)))). ( -16.30) >consensus _____________________UAUUGAAUUUUGUAAAAUUUAUCAAUUAAAAUCCAGUGGAAUAGCCUUAUGGUAUUCUUUAAAGGAAUACCCUAUAUAUUUCACGCUAAUACUUAGUA ........................................................((((((((....((.(((((((.......))))))).))..))))))))((((.....)))). (-14.29 = -14.63 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:07 2006