Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,121,535 – 15,121,655 |
Length | 120 |
Max. P | 0.797229 |
Location | 15,121,535 – 15,121,655 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.06 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -15.11 |
Energy contribution | -13.83 |
Covariance contribution | -1.27 |
Combinations/Pair | 1.53 |
Mean z-score | -2.01 |
Structure conservation index | 0.47 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15121535 120 - 23771897 AUUUCGAACGAAAUCUUGCCCAGAUUCAUCUAUUUGGCAACAAACAGAUAAAGCAGAUGGACCACCCGGAUUCCCGGGCGAUUCUUUUCGAAGAAAAGCUAUAUAACAAGCAAAAGCUAC .(((((((.(.((((....(((..((.((((.((((....)))).)))).)).....)))....(((((....))))).)))).).)))))))....(((........)))......... ( -29.70) >DroGri_CAF1 12014 120 - 1 AUUUUGAGCGGCAUUUGGCUCAGAUUCAUCUGUUUGGCAACAAGCGUGUGGCCCAAGCAGAUCAUCCGGAUUCAAGGGCCAUUUUCUUCGAAGAGAAGCUGUACAACAAACAGAAGCUGC ..(((((((........)))))))....((((((((......(((..(((((((.....((((.....))))...))))))).(((((....))))))))......))))))))...... ( -38.10) >DroWil_CAF1 11624 120 - 1 AUUUUGAGCGUCAUCUGGCUCAGAUUCAUUUGUUUGGCACCAAACAAGUCAAGGAAUCCCAACAUCCUGAUUCCCGGGCCAUACUCUUCGAGGAGAAACUAUAUAAUAAGCAGAAAUUGU (((((..((......((((((......(((((((((....)))))))))...((((((..........)))))).))))))..((((....))))..............)).)))))... ( -29.60) >DroMoj_CAF1 10480 120 - 1 ACUUUGAGCGGCAUUUGGCUCAGAUUCAUUUGUUUGGCAACAAAUACAUAGGCCAAACUGAACAUCCUGACUCCAGGGCUAUACUCUUUGAGGAGAAGCUCUACAAUAAGCAGAAGCUGC .......(((((.((((..((((.((((...(((((((.............)))))))))))....))))....((((((...((((....)))).))))))........)))).))))) ( -32.02) >DroAna_CAF1 11458 120 - 1 AUUUCGAACGGAAUCUGGCACAGAUUCAUCUCUUCGGCAACAAACAACUGAAGGAGAUGAACCAUCCAGAUUCCAGGGCCAUCCUCUUUGAGGAGAAAAUCUACAACAAACACAAGCUAC .((((....(((((((((....(.(((((((((((((..........))))).)))))))).)..))))))))).......(((((...)))))))))...................... ( -35.80) >DroPer_CAF1 10668 120 - 1 ACUUUGAGCGUAAUUUGGCGCAAAUCCAUCUGUUCGGCAACAAGCAGGUCAAACAGACCGGUCACCCAGACUCCCGGGCCAUACUCUUCGAGGAGAAGAUUUACAACAAACAGAAGCUAG .......((((......)))).......((((((.(((........((((.....))))((((.....)))).....)))....(((((.....))))).........))))))...... ( -29.60) >consensus AUUUUGAGCGGAAUCUGGCUCAGAUUCAUCUGUUUGGCAACAAACAAGUAAAGCAAACCGAACAUCCAGAUUCCAGGGCCAUACUCUUCGAGGAGAAGCUAUACAACAAACAGAAGCUAC .(((((((.......((((...........((((((....))))))...................((........)))))).....)))))))........................... (-15.11 = -13.83 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:06 2006