Locus 5510

Sequence ID 3L_DroMel_CAF1
Location 15,119,908 – 15,120,015
Length 107
Max. P 0.500000
window8711

overview

Window 1

Location 15,119,908 – 15,120,015
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -28.22
Consensus MFE -14.23
Energy contribution -14.73
Covariance contribution 0.50
Combinations/Pair 1.25
Mean z-score -2.46
Structure conservation index 0.50
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15119908 107 - 23771897
UAGCUGCCACAGCCGGAAACGAAGACACCAAAAAGGAGAAAAUAAAUGCACUCAAAGAUCUGCUAAAGCAGUUAAAAAUGUGCCAAGUUUAGGGUGCAGAAGCUCCA
..((((...))))((....)).............((((........(((((((......((((....))))....((((.......)))).)))))))....)))). ( -26.70)
>DroSec_CAF1 9824 107 - 1
UAGCUGCCACAGCCGGAAACGAGGACACCAAAAAGGAGAAGUUAAAUGCACUCAAAGAUUUGCUAAAGCAGUUAAAACUGUGCCAAGUUUAGGGUGCAGAAGCUCCA
..((((...))))((....)).............((((........(((((((..(((((((.....(((((....)))))..))))))).)))))))....)))). ( -30.40)
>DroSim_CAF1 10619 107 - 1
UAGCUGCCACAGCCGGAAACGAGGACACCAAAAAGGAGAAGUUAAAUGCACUCAAAGAUUUGCUAAAGCAGUUAAAAAUGUGCCAAGUUUAGGGUGCAGAAGCUCCA
..((((...))))((....)).............((((........(((((((..(((((((.....(((........)))..))))))).)))))))....)))). ( -26.90)
>DroEre_CAF1 10357 107 - 1
UAGCUGCCACAGGCGCAAGUGAAGACUCCAAAAAGGAGAAAUUAAUUGCUCUCAAGGAUUUAUUAAAGCAGCUAAAAAUGUGCCAAGUUUAAGGCGCCGAUAAUCAA
(((((((.....((....)).....((((.....))))...(((((...((.....))...))))).))))))).....(((((........))))).......... ( -26.70)
>DroYak_CAF1 11167 107 - 1
UAGCUGCCACCGCCGGAAACGAAGACUCCAAAAAGGAGAAAUUAACUGCUCUCAAGGAUUUACUAAAGCAGUUAAAAAUGUGCCAAGUUUAAGGUGCAGAUGCUCCA
...((((.(((..((....))....((((.....))))...(((((((((....((......))..))))))))).................)))))))........ ( -28.80)
>DroAna_CAF1 9846 107 - 1
UAGCUGCCGCUGGAGGAAAAGAGAGUUCCAAAACGGAGAAACUGAAUGUUCUGAAGGACUUGCUGCAGCAAUUAAAAAAGUGUCAUGUUUAGUUGACACAUUUUUGA
..(((((.((.((.((((.......))))....(((((..........))))).....)).)).)))))..(((((((.((((((........)))))).))))))) ( -29.80)
>consensus
UAGCUGCCACAGCCGGAAACGAAGACACCAAAAAGGAGAAAUUAAAUGCACUCAAAGAUUUGCUAAAGCAGUUAAAAAUGUGCCAAGUUUAGGGUGCAGAAGCUCCA
(((((((......((....))......((.....))...............................))))))).....(((((........))))).......... (-14.23 = -14.73 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:05 2006