Locus 551

Sequence ID 3L_DroMel_CAF1
Location 1,578,566 – 1,578,681
Length 115
Max. P 0.826437
window845

overview

Window 5

Location 1,578,566 – 1,578,681
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 92.29
Mean single sequence MFE -44.15
Consensus MFE -39.35
Energy contribution -39.68
Covariance contribution 0.34
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.89
SVM decision value 0.70
SVM RNA-class probability 0.826437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1578566 115 + 23771897
CCCAUUGUUUCUGGCGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGUGAAAGUCCCAGCAUCAAGAGACGCACAGACACCUGCCCGAUCGUCUCGGGCGGAUUCGUGUCCC
...(((((((((..(((((.((((.....)))))))))..)))))))))(((...(((.(........).))).))).(((((((((((((.....))))))))....))))).. ( -45.90)
>DroSec_CAF1 22757 115 + 1
CCCAUUGUUUCUGGCGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGUGAAAGUCCCAGCAUCAAGAGACGCACAGACACCUGCCCGAUCGUCUCGGGCGGAUUCGUGUCCC
...(((((((((..(((((.((((.....)))))))))..)))))))))(((...(((.(........).))).))).(((((((((((((.....))))))))....))))).. ( -45.90)
>DroSim_CAF1 23130 115 + 1
CCCAUUGUUUCUGGCGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGUGAAAGUCCCAGCAUCAAGAGACGCACAGACACCUGCCCGAUCGUCUCGGGCGGAUUCGUGUCCC
...(((((((((..(((((.((((.....)))))))))..)))))))))(((...(((.(........).))).))).(((((((((((((.....))))))))....))))).. ( -45.90)
>DroEre_CAF1 29919 115 + 1
CCCAUUGUUUCUGGUGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGCGAGAGUCCCAGCAUCAAGAGACGCACAGAUACCUGCCCGAUAGUCUCCGGCGGAUUUGUGUCCC
.(((((((((((..(((((.((((.....)))))))))..)))))))))).)...(((.(........).)))((((((((.((.(((.((.....)).)))))))))))))... ( -39.90)
>DroYak_CAF1 23865 115 + 1
CCCAUUGUUUCUGGCGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGCGAGAGCCCCAGCAUCAAGAGACGCACAGACACUUGCCCGAUAGUUUCGGGCGGAUUUGUGUCCC
.....(((((((..(((((.((((.....)))))))))..)))))))(((((...((....)).((....))))))).(((((((((((((.....))))))))....))))).. ( -45.20)
>DroAna_CAF1 31347 115 + 1
CCCAUUGUGUCCGGCGGAGCGUCCAUUGAAGACUUCCGGGAGAAGCAGUGCGAGAGCCCGAGCAUCAAGCGCCGCACGGACACCUGUCCGAUUGUUUCUGGGGGAUUUGUGUCCC
((((..(((((((((((.((.(((...((.....))..)))((.((.(.((....)).)..)).))..)).)))).)))))))......((.....))))))((((....)))). ( -42.10)
>consensus
CCCAUUGUUUCUGGCGGAGCAUCCAUUGAGGAUUUCCGGGAGAAGCAGUGCGAAAGUCCCAGCAUCAAGAGACGCACAGACACCUGCCCGAUCGUCUCGGGCGGAUUCGUGUCCC
.(((((((((((..(((((.((((.....)))))))))..)))))))))).).........((.((....)).))...(((((((((((((.....))))))))....))))).. (-39.35 = -39.68 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:09 2006