Locus 5509

Sequence ID 3L_DroMel_CAF1
Location 15,112,690 – 15,112,783
Length 93
Max. P 0.500000
window8710

overview

Window 0

Location 15,112,690 – 15,112,783
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.40
Mean single sequence MFE -22.47
Consensus MFE -15.27
Energy contribution -15.30
Covariance contribution 0.03
Combinations/Pair 1.33
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15112690 93 - 23771897
CAUGUUCAGUUUUCUCUUUGUCUUAAUCAAUAUA--UUUUGUGGUCGGCUAGUAAAAAGUUGAUGGGCUAAGUGGGCUUUUAGCCCCAU--------CGACUG
..........(((..((..(((.....(((....--..))).....))).))..)))(((((((((((((((......))))).)))))--------))))). ( -22.50)
>DroSec_CAF1 2773 93 - 1
CAUGUUCAGUUUUCUCUUUGUCUUAAUCAAUAUA--UUUUGUGGUCGGCUAGUAAAAGGUUGUUGGGCUAAGUGGGCUUUUAGCCCCAU--------CGACUG
......(((((....(((.((((....((((...--((((((((....))).))))).))))..)))).))).((((.....))))...--------.))))) ( -19.90)
>DroSim_CAF1 3642 93 - 1
CAUGUUCAGUUUUGUCUUUGUAUUAAUCAAUAUA--UUUGGUGGUCGGCUAGUAAAAAGUUGAUGGGCUAAGUGGCCUUUUAGCCCCAU--------AGAUUG
.............((((.((.....((((((...--((((.(((....))).))))..))))))((((((((......)))))))))).--------)))).. ( -21.60)
>DroEre_CAF1 2892 92 - 1
CAUGUUCAGUUUU-UCUUUGUCCUAAUCAAUAUA--UUUUGUGGUCGGCUAGUGAAAAGCUGAUGGGCUAAGUGGGCUUUUAGCCCCAU--------CGACUG
.....((((((((-((...(((.....(((....--..))).....)))....)))))))))).((((((((......))))))))...--------...... ( -26.10)
>DroYak_CAF1 3651 92 - 1
CGUGUUCAGCUUU-UCUUUGUCCUAAUCAAUAUA--UUUUGUGGUCGGCUAGUGAAAAGCUGAUGGGCUAAGUGGGCUUUUAGCCCCAU--------CGACUG
((((.((((((((-((...(((.....(((....--..))).....)))....)))))))))).((((((((......)))))))))).--------)).... ( -28.80)
>DroAna_CAF1 2488 90 - 1
-------------UUUUUUGUCUUAAUCAAUAAAAAUUUGUUCGCUCGCGGCUUAAAAGUUGAUGGGUUAAGUAGGCUUUUAGCCUCUUUUUACCUCUUAUUG
-------------..............((((((...............(((((....)))))..((((.(((.((((.....)))))))...)))).)))))) ( -15.90)
>consensus
CAUGUUCAGUUUU_UCUUUGUCUUAAUCAAUAUA__UUUUGUGGUCGGCUAGUAAAAAGUUGAUGGGCUAAGUGGGCUUUUAGCCCCAU________CGACUG
...................(((.....................(((((((.......)))))))((((((((......))))))))............))).. (-15.27 = -15.30 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:04 2006