Locus 5508

Sequence ID 3L_DroMel_CAF1
Location 15,111,441 – 15,111,536
Length 95
Max. P 0.967565
window8709

overview

Window 9

Location 15,111,441 – 15,111,536
Length 95
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 84.33
Mean single sequence MFE -12.24
Consensus MFE -10.00
Energy contribution -10.66
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.82
SVM decision value 1.61
SVM RNA-class probability 0.967565
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15111441 95 - 23771897
AUCAUUCUAUUAAUCAAUUACACUU-UAAAUUACAUUUUCAUAUAGUUUGGAUACUAAACUACCC-UCAGGUCCAUCCUAUAUG---AUUCUCUCAUAUG
.........................-............((((((((..(((((............-....)))))..)))))))---)............ ( -14.69)
>DroSec_CAF1 1688 100 - 1
UUCAUUCCAUUAAUCAAUUACACAUACGAAUUACUUUUUCACAUAGUUUGGAUACUUAAUAACCCAUCAGGUCCAUCCUUUAUGAAUAUUUUCUCAUAUG
......................((((.((........((((...((..(((((.................)))))..))...)))).......)).)))) (  -9.89)
>DroSim_CAF1 2515 96 - 1
UUUAUUCCAUUAAUCAAUUACACAUAUGAAUUACAUUUUCAUAUAGCUUGGAUACUAAAUAACCCAUCAGGUCCAUCCUAUAUGUAUAUUCUCUCA----
...........................((((........(((((((..(((((.................)))))..)))))))...)))).....---- ( -12.13)
>consensus
UUCAUUCCAUUAAUCAAUUACACAUAUGAAUUACAUUUUCAUAUAGUUUGGAUACUAAAUAACCCAUCAGGUCCAUCCUAUAUG_AUAUUCUCUCAUAUG
.......................................(((((((..(((((.................)))))..)))))))................ (-10.00 = -10.66 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:03 2006