| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,099,059 – 15,099,159 |
| Length | 100 |
| Max. P | 0.862734 |
| Location | 15,099,059 – 15,099,159 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -36.72 |
| Consensus MFE | -30.07 |
| Energy contribution | -30.18 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.862734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15099059 100 + 23771897 UAGCAGCGAAGACUCGCUGCAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG----UGGGGUUCGUUGUCCGCUGGCAUAGCUGGCAUUACUGCUU---- ..(((((((....)))))))...(((((((..(((.....))).)))))))(..((((..----.(((........)))((..((...))..)).))))..)..---- ( -37.20) >DroVir_CAF1 2386 101 + 1 GUGCAGCGACGCCUCGCUGCUAUGGCUAUUACGACUAGAUGAUUGAUGGCAGUAGUGAUUGUCAUUGGGUU------CAGCU-AUAUUACUGGCAUUCGUGCUUAUUC ..(((((((....))))))).........(((((...((...(..((((((((....))))))))..)..)------).(((-(......))))..)))))....... ( -30.30) >DroSec_CAF1 1986 100 + 1 UAGCAGCGAAGACUCGCUGCAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG----UGGGGUUCGUUGUCCGCUGGCAUAGCUGGCAUUACUGCUU---- ..(((((((....)))))))...(((((((..(((.....))).)))))))(..((((..----.(((........)))((..((...))..)).))))..)..---- ( -37.20) >DroSim_CAF1 1992 100 + 1 UAGCAGCGAAGACUCGCUGCAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG----GGGGGUUCGUUGUCCGCUGGCAUAGCUGGCAUUACUGCUU---- ..(((((((....)))))))...(((((((..(((.....))).)))))))(..((((..----(((.(.....).)))((..((...))..)).))))..)..---- ( -38.40) >DroEre_CAF1 2492 100 + 1 GAGCAGAGAAGACUCGCUACAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG----UGGGGUUCGCUGUCCGCUGGCAUCGCUGGCAUUGCUGCUU---- ((((((.(((..((((((((..((((((((..(((.....))).))))))))..))..))----)))).))).......((..((...))..))....))))))---- ( -35.70) >DroYak_CAF1 2122 100 + 1 GAGCAGCGAGGACUCGCUACAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG----UGGAGUUCGUUGUCCGCUGGCAUCGCUGGCAUUGCUGCUU---- ((((((((((((((((((((..((((((((..(((.....))).))))))))..))..))----).)))))).......((..((...))..)).)))))))))---- ( -41.50) >consensus GAGCAGCGAAGACUCGCUGCAGUUGCUGUUUUGACUAGAAGUUUGACGGCAGUGGUAAAG____UGGGGUUCGUUGUCCGCUGGCAUAGCUGGCAUUACUGCUU____ ..(((((((....)))))))....((((((..(((.....))).))))))((((((((.......(((........)))((((((...)))))).))))))))..... (-30.07 = -30.18 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:59 2006