Locus 5502

Sequence ID 3L_DroMel_CAF1
Location 15,088,580 – 15,088,677
Length 97
Max. P 0.995803
window8700

overview

Window 0

Location 15,088,580 – 15,088,677
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 71.73
Mean single sequence MFE -19.56
Consensus MFE -6.76
Energy contribution -7.04
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -2.50
Structure conservation index 0.35
SVM decision value 2.62
SVM RNA-class probability 0.995803
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15088580 97 + 23771897
CCUUGACGUUUCGUACUGAAAUGGCAAAUAACUUGAAUUUAAGUCAUUAAAUUAAAUUAAAUUCGAGCUAGAGUA-GA-CUUCCCCCUGCUCUUUUCAA
..(((.((((((.....)))))).)))....(((((((((((..............)))))))))))..((((((-(.-.......)))))))...... ( -21.74)
>DroSec_CAF1 5879 79 + 1
UAUUGACUU--------------------AGCUUGAAUUUAAGACAUUAAAUUAAAUUAAGUUCGAGCUGUAGUAAGACCUUCCCCCUGCUCUUUGCAA
.....((((--------------------(((((((((((((..............)))))))))))))).))).............(((.....))). ( -18.64)
>DroSim_CAF1 6498 78 + 1
UAUUGACUU--------------------UACUUUAAUUUAAGUCAUUAAAUUAAAUUAAGUUCGAGCUGGAGUA-GACCUUCCCCCUGCUCUUUGCAA
..((((.((--------------------((.((((((((((....)))))))))).)))).))))((.((((((-(.........)))))))..)).. ( -20.30)
>DroEre_CAF1 5875 87 + 1
CAUUGA---------CUGAAGGAGCAAAUAACUUGAUUUGAAGUCAUUAAAUUAAAUUAAGUUCGAGCUGGUGUA-GU-UUUCCCCCUGCUCUUU-UAA
......---------.((((((((((...((((((((((((..........)))))))))))).((((((...))-))-))......))))))))-)). ( -20.50)
>DroYak_CAF1 5900 88 + 1
CAUUGACGUUUCGCACUGAAAGAGCAAAUAACUCGAAUUUAAGUCAUUAAAUUAAAUUAAGUUCGAGCUGGAGGA-GA---------UGCUAUUU-UAA
......((((((((.(.....).))......(((((((((((..............)))))))))))......))-))---------))......-... ( -16.64)
>consensus
CAUUGACGU______CUGAA___GCAAAUAACUUGAAUUUAAGUCAUUAAAUUAAAUUAAGUUCGAGCUGGAGUA_GA_CUUCCCCCUGCUCUUU_CAA
...............................(((((((((((..............)))))))))))................................ ( -6.76 =  -7.04 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:54 2006