Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,578,408 – 1,578,526 |
Length | 118 |
Max. P | 0.728957 |
Location | 1,578,408 – 1,578,526 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -45.30 |
Consensus MFE | -40.05 |
Energy contribution | -40.50 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.19 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1578408 118 - 23771897 GGCAGGGGCAGCGGCGAGUCCGUGGCAUCACUGCAAUAAGCACCCGAAUCCCUGUGAUGCGACAAUGAGGAAGAUAGAGUGUAGUCCCUGUGAAUGGAGGAGUUAUUGCUCCCAGCCG (((.(((((((..((...(((((.((((((((((.....)))...........))))))).)).((..(((..((.....))..)))..))....)))...))..)))).))).))). ( -40.90) >DroSec_CAF1 22599 118 - 1 GGCAGGGGCAGUGGCGAGUCCGUGGCAUCACUGCAAUAAGCACCCGAAUCCCUGUGAUGCGACAAUGAGGAAGAUAGAGUGUAGUCCCUGUGAAUGGAGGAGUUAUUGCUCCCUGCCG (((((((((((((((...(((((.((((((((((.....)))...........))))))).)).((..(((..((.....))..)))..))....)))...)))))))).))))))). ( -48.80) >DroSim_CAF1 22972 118 - 1 GGCAGGGGCAGUGGCGAGUCCGUGGCAUCACUGCAAUAAGCACCCGAAUCCCUGUGAUGCGACAAUGAGGAAGAUAGAGUGUAGUCCCUGUGAAUGGAGGAGUUAUUGCUCCCUGCCG (((((((((((((((...(((((.((((((((((.....)))...........))))))).)).((..(((..((.....))..)))..))....)))...)))))))).))))))). ( -48.80) >DroEre_CAF1 29761 118 - 1 GGCAGGGGCAGUGGCGAAUCCGUGGCAUCACUGCAAUAGGCACCCGAGUCCCUGUGAUGCGACAAUGAGGAAGAUAGAGUGUAGUCCCUGUGUAUGGAGGAGUUAUUGCUCCCUGCCG (((((((((((((((...(((((.(((((((......(((.((....)).)))))))))).)).((..(((..((.....))..)))..))....)))...)))))))).))))))). ( -51.00) >DroYak_CAF1 23707 118 - 1 GGCAGAGGCAGUGGCGAAUCCGUGGCAUCACUGCAAUAGGCACCCGAGUCCCUGUGAUGCGACAGUGAAGAAGAUAGCGUGUAAUCCCGGUGAAUGGAGGAGUUAUUGCUCCCUGCCG (((((.(((((((((...(((((.(((((((......(((.((....)).)))))))))).))...........((.((........)).))...)))...)))))))))..))))). ( -41.90) >DroAna_CAF1 31189 118 - 1 GGCAGAGGUAGCGGCGAGUCGGUGGCGUCACUGCAGUAUGCCCCAGAGUCCCGGUGGUGCGACAACGAGGAAGAUAGCGUGUAGUCCCUGUGGAUGGAGGAGUUGUUGCUUCCCGCGG .((.(.((.((((((((.((((.(((((.((....)))))))))...(((((((.((.((.(((.((..........))))).))))))).))))....)).)))))))).))))).. ( -40.40) >consensus GGCAGGGGCAGUGGCGAGUCCGUGGCAUCACUGCAAUAAGCACCCGAAUCCCUGUGAUGCGACAAUGAGGAAGAUAGAGUGUAGUCCCUGUGAAUGGAGGAGUUAUUGCUCCCUGCCG (((((((((((((((...(((((.((((((((((.....)))...........))))))).)).((..(((..((.....))..)))..))....)))...)))))))).))))))). (-40.05 = -40.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006