Locus 55

Sequence ID 3L_DroMel_CAF1
Location 188,993 – 189,113
Length 120
Max. P 0.768958
window78

overview

Window 8

Location 188,993 – 189,113
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.56
Mean single sequence MFE -38.24
Consensus MFE -22.27
Energy contribution -21.58
Covariance contribution -0.69
Combinations/Pair 1.44
Mean z-score -1.98
Structure conservation index 0.58
SVM decision value 0.52
SVM RNA-class probability 0.768958
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 188993 120 + 23771897
CAUCCCUCCUUCUGGAAAAUAGACUCCACUUCAAUCUGAUGAAAGCACACAAUUUCGUCAGUGCCCGCACGAAAUAUAAUAAAUCGCGCGGAAGUGGUUCCCUCGUCAAUAGCCCCAACG
......(((....))).....(((.(((((((...(((((((((........)))))))))....(((.(((...........))).)))))))))).......)))............. ( -30.60)
>DroVir_CAF1 5770 120 + 1
CAGCCCUCCUUGACGUAAAUGGAGGGCACCUCGAUCUGAUGGUAGCAGACGAUGUCAUCGGUGCCCGCACGGAAUAUCAUAAAGCGCGCCGAGGUCGUGCCCUCAUCAAUGGCGCCAAUA
..(((((((...........)))))))((((((..((((((..(........)..)))))).((.(((...............))).)))))))).(((((.........)))))..... ( -41.86)
>DroGri_CAF1 5480 120 + 1
CAGCCCUCCUUGACGAAAAUCGAAGGCACCUCGAUUUGAUGAUAACAGACAAUGUCAUCGGUACCCGCACGAAAUAUCAUGAAACGAGCCGAUGUGGUGCCCUCAUCGAUGGCGCCAACA
.............((.....))..(((.(((((((..(((((((........)))))))((((((.(((((.....((.......))..)).)))))))))...))))).)).))).... ( -32.60)
>DroWil_CAF1 6712 120 + 1
CAUCCCUCUUUGGCAAAUAUCGAUGGGAUUUCAAUCUGAUGAUAGCAGACAAUGUCAUCGGUUCCAGCUCGGAAUAUAAUGAAACGUGCCGAUGUGGUGCCAUCAUCAAUGGCGCCCACA
.........((((((.....((((((.(((....((((.......)))).))).))))))(((((.....)))))...........))))))(((((((((((.....)))))).))))) ( -36.90)
>DroMoj_CAF1 5384 120 + 1
CAACCUUCCUUCACAAAAAUGGACGGCACCUCGAUUUGAUGAUAGCAAACAAUAUCAUCGGUGCCUGCCCGAAAGAUCAUAAACCGUGCCGAUGUGGUGCCCUCAUCGAUGGCGCCAAUA
......(((...........)))((((((........(((((((........)))))))(((...((..(....)..))...)))))))))...(((((((.((...)).)))))))... ( -38.40)
>DroAna_CAF1 5062 120 + 1
CAUCCCUCCUUGGCGAAGAUCGAGGGCACCUCGAUCUGGUGAUAGCAGACAAUGUCAUCGGUGCCGGCGCGGAAAAUUAUGAAUCGGGCCGAGGUGGUGCCCUCGUCGAUGGCACCCACA
....((((...((((.(((((((((...)))))))))(((((((........)))))))..))))(((.(((...........))).))))))).((((((.((...)).)))))).... ( -49.10)
>consensus
CAUCCCUCCUUGACGAAAAUCGACGGCACCUCGAUCUGAUGAUAGCAGACAAUGUCAUCGGUGCCCGCACGAAAUAUCAUAAAACGCGCCGAUGUGGUGCCCUCAUCAAUGGCGCCAACA
........................((((((.......(((((((........))))))))))))).((.((.............)).))....((((((((.........)))))).)). (-22.27 = -21.58 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:11 2006