| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,083,629 – 15,083,747 |
| Length | 118 |
| Max. P | 0.786691 |
| Location | 15,083,629 – 15,083,747 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.09 |
| Mean single sequence MFE | -34.51 |
| Consensus MFE | -19.18 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15083629 118 - 23771897 --CUUAAGCUCCAACUGCAGUUGCCUAAGUUCCGAUUCCUUGGCAUCGAUUUCCGCAUUGGCCUGCUGUUCCACUUGCAACGCAGCUUCCUUGAGCUCCUCCAGCUGCGUUUGGAGCUUU --...(((((((((.((((((((....(((((((((.(....).))))...........((...(((((............)))))..))..)))))....)))))))).))))))))). ( -40.20) >DroVir_CAF1 847 120 - 1 UGCUUCAGCUCGGUUUGCAACUGUCUCAGCUCUAAUUCCUUCGCAUCAAUUUCGGAAUUGGCUUGCUGCUCCACCUGCAAAGCAGCUUCCUUUAACUCGUACAGUUGCGUUUGCAACUUU ......((((.(.((((((..((...((((.((((((((..............))))))))...))))...))..)))))).)))))...............((((((....)))))).. ( -31.94) >DroGri_CAF1 866 120 - 1 UGUUUCAGUUCAUUUUGCAGCUGACGCAGCUCUGAGUCGCGGGCAUCUAUCUCGGAAUUGGCCUGCUGCUCCACCUGCAGUGCCGCUUCCUUCAGCUCGUCCAGAUGCGUUUGCAACAUU ..............(((((...((((((..((((.(..((((((.........((((.((((..(((((.......))))))))).))))....)))))))))))))))))))))).... ( -37.42) >DroSim_CAF1 900 118 - 1 --CUUAAGCUCCAUUUGGAGUUGCCUAAGUUCCAAUUCCUUGGCAUCGAUCUUUUCAUUGGCCUGCUGUUCCACUUGCAAAGCAGCUUCCUUGAGCUCCUCCAGCUGCGUUUGGAGCUUC --...((((((((..((.(((((....(((((.........(((...((.....))....))).((((((..........))))))......)))))....))))).))..)))))))). ( -35.80) >DroEre_CAF1 914 118 - 1 --CUUAAGCUCCAACUGCAGUUGCCGUAGUUCGAGUUCCUUGGCAUCGAUCUCCGCAUUGGCCUGCUGUUCCACUUGCAAAGCAGCCUCCUUGAGCUCCUCCAGCUGCGUUUGUAGCUUU --...(((((.(((.((((((((..(.((((((((......(((..((((......))))))).((((((..........))))))...)))))))).)..)))))))).))).))))). ( -37.90) >DroYak_CAF1 866 118 - 1 --CUUAAGCUCCAACUGCAGUUGCCUAAGUUCCAGUUCCUUGGCAUCAAUCUCCGCAUUGGCCUGAUGUUCCACUUGCAAAGCAGCCUCCUUUAGUUCCUCCAGCUGUGUUUGAAGCUUU --...(((((.(((..(((((((((.(((.........))))))...............(((.((.(((.......)))...)))))...............))))))..))).))))). ( -23.80) >consensus __CUUAAGCUCCAACUGCAGUUGCCUAAGUUCCAAUUCCUUGGCAUCGAUCUCCGCAUUGGCCUGCUGUUCCACUUGCAAAGCAGCUUCCUUGAGCUCCUCCAGCUGCGUUUGCAGCUUU .....(((((.((..((((((((....((((..........(((..((((......))))))).(((((............))))).......))))....))))))))..)).))))). (-19.18 = -19.97 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:49 2006