Locus 5497

Sequence ID 3L_DroMel_CAF1
Location 15,078,625 – 15,078,731
Length 106
Max. P 0.939632
window8691

overview

Window 1

Location 15,078,625 – 15,078,731
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -26.51
Consensus MFE -21.64
Energy contribution -21.62
Covariance contribution -0.02
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.82
SVM decision value 1.30
SVM RNA-class probability 0.939632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15078625 106 + 23771897
UUUUCUGCCAAGAACUAUAUUUUUAAAGAGCACCACAGAGUGGACUUCAGUGUAAUUUUCUGCUUGUUGACGCAAUUAGUUGAGAUAGGCAGAGAAUUAAUCAAAC
..((((....)))).............(((..((((...))))..)))....((((((((((((((((....(((....))).))))))))))))))))....... ( -25.00)
>DroSec_CAF1 43648 106 + 1
UUAUCUGCUUAGAACUAUAUUUUUAAAGAGCACCACAGAGUGGACUUCAGUGUAAUUUUCUGCUUGUUGACGCAAUUAGUUGAGAUAGGCAGAGAAUUAAUCAAAC
.....(((((.................)))))((((...)))).........((((((((((((((((....(((....))).))))))))))))))))....... ( -25.13)
>DroSim_CAF1 56329 102 + 1
UUAUCUGUCAAGAACUAUAUUUUUAAAGAGCACCACAGAGUGGACUUCAGUGUA--UUUCUGCUUGU-GACGCA-UUAGUUGAGAUAGGCAGAGAAUUAAUCAAAC
...((((((..................(((..((((...))))..)))....((--((((.(((.((-(...))-).))).))))))))))))............. ( -19.70)
>DroEre_CAF1 45542 105 + 1
UUAUCUGCUAGGAACUAUAU-UUUAAAGAGCACCAUAGAGUGGUCUCUAGUGUGGUUCUCUGCUUGUUGACGCAAUUAGUAGACAUGGGCAGAGAAUUAAUCAAAC
...((((((..(((((((((-(....((((.(((((...)))))))))))))))))))((((((.((((...)))).))))))....))))))............. ( -33.50)
>DroYak_CAF1 45147 106 + 1
UUAUCUGCUGAGAACUAUAUGUUUAAAGAGCACCACAGAGUGAACUUCAGUGUAGUUUUCUGCUUGUUGACGCAAUUAGCAGAGAUAGGCAGAGAAUUAAUCAAAC
......(((((((((.....))))..((..(((......)))..))))))).((((((((((((((((...((.....))...))))))))))))))))....... ( -29.20)
>consensus
UUAUCUGCUAAGAACUAUAUUUUUAAAGAGCACCACAGAGUGGACUUCAGUGUAAUUUUCUGCUUGUUGACGCAAUUAGUUGAGAUAGGCAGAGAAUUAAUCAAAC
...(((....)))..............((((((....(((....)))..))))(((((((((((((((...((.....))...)))))))))))))))..)).... (-21.64 = -21.62 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:46 2006