Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,065,921 – 15,066,031 |
Length | 110 |
Max. P | 0.514615 |
Location | 15,065,921 – 15,066,031 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 72.61 |
Mean single sequence MFE | -18.39 |
Consensus MFE | -9.98 |
Energy contribution | -9.65 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.70 |
Structure conservation index | 0.54 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15065921 110 + 23771897 UGCAUUAAUACAUUUUAUUGUGGUUAGUUUAUGCGUGAACCAAACGGAUACUGUUAAUAUGAUUUUCUAGCCAAACAUAAAAUAACUAGAAGUAUUCGUUCAUAAUUGAA .((((.(((.(((......)))....))).))))((((((..(((((...))))).....((.(((((((...............)))))))...))))))))....... ( -17.16) >DroSec_CAF1 31105 94 + 1 UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCUUAAAU--------UUCUG----ACUGAUUUUCUAGCCAAACAUGAAAUAACUAAAAGUAUG----CAUAAUUAUA .......((((((.......(((((((((((((((..((.--------.((..----...))..))..))).....)))))))))))).....)))----)))....... ( -19.40) >DroSim_CAF1 31090 83 + 1 UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCGUGAUU--------UUCUG----ACUG-----------AAACAUGAAAUAACUAAAAGUAUG----CAUAACUAUA .......((((((.......(((((((((((((......(--------(((..----...)-----------)))))))))))))))).....)))----)))....... ( -18.60) >consensus UGCAUCAAUGCAUUUUAUUGUGGUUAUUUUAUGCGUGAAU________UUCUG____ACUGAUUUUCUAGCCAAACAUGAAAUAACUAAAAGUAUG____CAUAAUUAUA (((..(((((.....)))))(((((((((((((..........................................)))))))))))))...)))................ ( -9.98 = -9.65 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:41 2006