| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,056,829 – 15,056,940 |
| Length | 111 |
| Max. P | 0.599980 |
| Location | 15,056,829 – 15,056,940 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -43.57 |
| Consensus MFE | -32.10 |
| Energy contribution | -32.49 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15056829 111 + 23771897 UGAGCAAGUCCGCUUGAACUGCCAUUACCACUGUGACUUAGGUUCUGGUU------CUGAGUAUGAGCCUGAUUUGCGGGUGGCGGUCUGGGCGGCGGCGUUGGCUGCUGCAUUUGA ...(((....(((((..((((((((.....(((..(.((((((((.....------........)))))))).)..)))))))))))..)))))(((((....))))))))...... ( -45.42) >DroSec_CAF1 22739 111 + 1 UGACCAAGUCCGCUUGAACUGCCAUUAGCACUGUGACUUAGGUUCUGGUU------CUGAGUAUGAGCCUGAUUUGCGGGUGGCGGUCUGGGCGGCGGCGUUGGCUGCUGCAUUUGA ....(((((.(((((..((((((((.....(((..(.((((((((.....------........)))))))).)..)))))))))))..)))))((((((.....))))))))))). ( -44.52) >DroSim_CAF1 22686 111 + 1 UGACCAAGUCCGCUUGAACUGCCAUUAGCACUGUGACUUAGGUUCUGAUU------CUGAGUAUGAGCCUGAUUUGCGGGUGGCGGUCUGGGCGGCGGCGUUGGCUGCUGCAUUUGA ....(((((.(((((..((((((((.....(((..(.((((((((.....------........)))))))).)..)))))))))))..)))))((((((.....))))))))))). ( -44.52) >DroEre_CAF1 23128 111 + 1 UGUCCAAGUCCGCUGUUAUUGCCACUGCCACUGUGACUUAGGUUCUGGUU------CUGAGUAUGAGCCUGAUUUGCAGGUGGAGGUCUGGGCGGCGGCGUUGGCUGUUGCAUUUGA .(.((((..((((((((...(((.(..((..((..(.((((((((.....------........)))))))).)..))))..).)))...))))))))..)))))............ ( -41.12) >DroYak_CAF1 23368 111 + 1 UGAGCCAGUCCGCUUGUGCUGCCAUUGCCACUGUGACUUAGGUUCUGGUU------CUGAGUAUGAGCCUGAUUUGCAGGUGGAGGUCUGGGCGGCGGCGUUGGCUGCUGCAUUUGA ....((((.((((....))........((((((..(.((((((((.....------........)))))))).)..)).)))).)).))))((((((((....))))))))...... ( -46.42) >DroAna_CAF1 22542 109 + 1 --UCCAAG-CGGC----AUGGCCCCU-CCGAUCUGACUCAGAUUUAGAUUUGAAGACUGGCUCUGAUUUUGAUUAGCUGGCGGAGGUCUGGGCGGCGGCGUCGGCUGCUGCAUCUGA --.(((..-.(((----...)))(((-(((..((((.(((((.(((((.((.......)).))))).)))))))))....))))))..)))((((((((....))))))))...... ( -39.40) >consensus UGACCAAGUCCGCUUGAACUGCCAUUACCACUGUGACUUAGGUUCUGGUU______CUGAGUAUGAGCCUGAUUUGCGGGUGGAGGUCUGGGCGGCGGCGUUGGCUGCUGCAUUUGA ...((.((.((((.......)).....(((((((((.((((((((...................)))))))).))))).)))).)).))))((((((((....))))))))...... (-32.10 = -32.49 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:40 2006