| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,052,475 – 15,052,569 |
| Length | 94 |
| Max. P | 0.938745 |
| Location | 15,052,475 – 15,052,569 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -21.78 |
| Energy contribution | -21.87 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15052475 94 + 23771897 GAAAAAUAUAUUUUCCAUAUUACACAUACGCCAUGUGGGUCAGGCCGUAACGCUUGACAAAGUUUUCACAAUAUUAGCGGAAAAUGCUUGUGAA---- ........((((((((......(((((.....))))).(((((((......)))))))....................))))))))........---- ( -22.20) >DroSec_CAF1 18423 94 + 1 GCAAUAGAUAUUUUCCAUAUUACACAUACGCCAUGUGGGUCAGGUCGUAACGCUUGACAAAGUUUUCACAAUAUUGGCGGAAAAUGUUUGUGAA---- ...(((((((((((((.(((.....))).((((((((((((((((......))))))).......)))))....)))))))))))))))))...---- ( -26.91) >DroSim_CAF1 18357 94 + 1 GCAAAAGAUAUUUUCCAUAUUACACAUACGGCAUGUGGGUCAGGUCGUAACGCUUGACAAAGUUUUCACAAUAUUGGCGGAAAAUGUUUGUGAA---- .....(((((((((((......(((((.....))))).(((((((......)))))))....................))))))))))).....---- ( -24.00) >DroEre_CAF1 18907 93 + 1 GCAUAAGAUAUUUUCCAUAUUACACAUACGCCAUGUGGGUCAGGCCGUAACGCUUGACA-AGUUUUUAGAACAUUUGCGGAAAGUAUUUGUGCA---- (((((.((((((((((......(((((.....))))).(((((((......))))))).-..................))))))))))))))).---- ( -31.00) >DroYak_CAF1 19028 93 + 1 GAGAAAGAUAUUUUCCAUAUUACACAUACGCCAUGUGGGUCAGGCCGUAACGCUUGACA-AGUUUAUAGAACAUUUGCGGAAAGUAUUUGUGCA---- ..(..(((((((((((......(((((.....))))).(((((((......))))))).-..................)))))))))))...).---- ( -26.30) >DroPer_CAF1 19994 88 + 1 ----GCAAUAUUUUCAAUAUUACGCAUACGCUAUGUGGGUCAGAGCGUAACGCUUGACAAACUUUUG-GGACUU-----GGGAGUAUCUGCUAACCCA ----((((((((..(((.....((((((...)))))).((((.((((...)))))))).........-....))-----)..))))).)))....... ( -22.00) >consensus GCAAAAGAUAUUUUCCAUAUUACACAUACGCCAUGUGGGUCAGGCCGUAACGCUUGACAAAGUUUUCACAACAUUGGCGGAAAAUAUUUGUGAA____ .....(((((((((((......(((((.....))))).(((((((......)))))))....................)))))))))))......... (-21.78 = -21.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:39 2006