Locus 5491

Sequence ID 3L_DroMel_CAF1
Location 15,048,327 – 15,048,443
Length 116
Max. P 0.715392
window8683

overview

Window 3

Location 15,048,327 – 15,048,443
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 86.61
Mean single sequence MFE -21.62
Consensus MFE -18.06
Energy contribution -17.87
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -1.90
Structure conservation index 0.84
SVM decision value 0.39
SVM RNA-class probability 0.715392
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15048327 116 + 23771897
ACAAUCAUUUGCUGAUUCAUGGCCAUUAAUCGCAGCUUCAUCAGUUGCAAGGAACUCUCCUCAUCGUCGUCAUCCUCUUCAUUCUCAUCAUCAUCCAUUUCCAGAAUGGUUAACUC
..((((((((...((...((((.........((((((.....)))))).((((....)))).................................)))).))..))))))))..... ( -19.00)
>DroSec_CAF1 15418 116 + 1
ACAAUCAUUUGCUGAUUCAUGGCCAUUAAACGCAGCUUCAUCAGUUGCAAGGAACUCUCCUCAUCGUCGUCAUCUUCUUCAUUCUCAUCAUCAUCCAUUUCCAGAAUGGUUAGCUC
..........((((((..(((((........((((((.....)))))).((((....)))).......)))))......((((((.................)))))))))))).. ( -22.23)
>DroSim_CAF1 15385 116 + 1
ACAAUCAUUUGCUGAUUCAUGGCCAUUAAACGCAGCUUCAUCAGUUGCAAGGAACUCUCCUCAUCGUCGUCAUCUUCUUCAUUCUCAGCAUCAUCCAUUUCCAGAAUGGUAAGCUC
.........((((((...((((.........((((((.....)))))).((((....)))).................))))..))))))....((((((...))))))....... ( -22.00)
>DroEre_CAF1 15826 113 + 1
ACAAUCAUUUGCUGAUUCAUGGCCAUCAAUCGCAGCUUCAUUAGCUGCAGGGAACUCUCCUCAUCAUCGUCAU---CUUCCUCUUCAUUUUCCUCCAUUUCCAGAAUGGUCAACUC
..(((((.....)))))..((((((((....((((((.....)))))).((((....))))............---...........................).))))))).... ( -23.10)
>DroYak_CAF1 15891 116 + 1
ACAAUCAUUUGCUGAUUCAUGGCCAUCAAUCGCAGCUUCAUUAGUUGCAGGGAACUCUCCUCAUCAUCGUCAUCGUCUUCAUCUUCAUUCUCCUCCAUUUCUAGAAUGGUUAACUC
.........((..(((..(((((........((((((.....)))))).((((....)))).......))))).)))..))...(((((((...........)))))))....... ( -20.50)
>DroAna_CAF1 15822 113 + 1
CCAAGCAUCUGCUGAUUCAUGGCCAUCAGACGCAGCUUCAUCAGUUGCAAGGAGCUCUCCUCGUCAUCCUCAUCAUCCUCAAACUCCUCACUAGCC---UCCAGAAUGGUCACCUC
...(((....)))......(((((((..(((((((((.....)))))).((((....)))).))).........................((....---...)).))))))).... ( -22.90)
>consensus
ACAAUCAUUUGCUGAUUCAUGGCCAUCAAACGCAGCUUCAUCAGUUGCAAGGAACUCUCCUCAUCAUCGUCAUCUUCUUCAUUCUCAUCAUCAUCCAUUUCCAGAAUGGUUAACUC
..(((((.....)))))..(((((((.....((((((.....)))))).((((....))))............................................))))))).... (-18.06 = -17.87 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:38 2006