Locus 549

Sequence ID 3L_DroMel_CAF1
Location 1,578,146 – 1,578,256
Length 110
Max. P 0.999804
window843

overview

Window 3

Location 1,578,146 – 1,578,256
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 97.82
Mean single sequence MFE -29.64
Consensus MFE -28.56
Energy contribution -28.80
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.62
Structure conservation index 0.96
SVM decision value 4.12
SVM RNA-class probability 0.999804
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1578146 110 + 23771897
CAUGCUCCCAUGUCGGUGCCGUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCUCUGGGCAGCAGUCCCAAGUUCACCCACCACCAGCAUCAGCACAAUCA
..((((...((((.((((......(((((...((..........((((....))))((((((....)))))).))...))))).......)))).)))).))))...... ( -29.82)
>DroSec_CAF1 22337 110 + 1
CAUGCUCCCAUGUCGGUGCCCUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCCCUGGGCAGCAGUCCCAAGUUCACCCACCACCAGCAUCAGCACAACCA
..((((...((((.((((......(((((...((..........((((....))))((((((....)))))).))...))))).......)))).)))).))))...... ( -30.92)
>DroSim_CAF1 22710 110 + 1
CAUGCUCCCAUGUCGGUGCCCUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCCCUGGGCAGCAGUCCCAAGUUCACCCACCACCAGCAUCAGCACAACCA
..((((...((((.((((......(((((...((..........((((....))))((((((....)))))).))...))))).......)))).)))).))))...... ( -30.92)
>DroEre_CAF1 29499 110 + 1
CAUGCUCCCAUAUCGGUGCCCUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCCCUGGGCAGCAGUCCCAAGUUCACCCACCACCAGCAUCAGCACAACCA
.(((((........((((..((...((.....))..........((((....))))((((((....)))))).......))..)))).......)))))........... ( -27.46)
>DroYak_CAF1 23445 110 + 1
CAUGCUCCCAUGUCGGUGCCCUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCCCUGGGCAGCAGUCCCAAGUUCACCCACCAUCAGCAUCCGCACAACCA
.(((((.....((.((((..((...((.....))..........((((....))))((((((....)))))).......))..)))).))....)))))........... ( -29.10)
>consensus
CAUGCUCCCAUGUCGGUGCCCUACAGCUUCCAGCACAAUGCCCAACACUUCAGUGUGCUGCCCCUGGGCAGCAGUCCCAAGUUCACCCACCACCAGCAUCAGCACAACCA
..((((...((((.((((......(((((...((..........((((....))))((((((....)))))).))...))))).......)))).)))).))))...... (-28.56 = -28.80 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006