Locus 5489

Sequence ID 3L_DroMel_CAF1
Location 15,030,322 – 15,030,413
Length 91
Max. P 0.940442
window8680

overview

Window 0

Location 15,030,322 – 15,030,413
Length 91
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.27
Mean single sequence MFE -36.43
Consensus MFE -23.81
Energy contribution -24.00
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -2.63
Structure conservation index 0.65
SVM decision value 1.29
SVM RNA-class probability 0.940442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15030322 91 + 23771897
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAA-CAUUCGGCCAA----------CUUCGGCUCCGGA-------------CGAACGGAAAGCUCCACGACUCCUUAU
..((..(((((.((((((((...))))))))(((((....-....)))))..----------.....))((((..-------------....)))).))).))............ ( -32.60)
>DroSec_CAF1 47360 91 + 1
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAA-CAUUCGGCCAA----------CUUCGGCUACGGC-------------CGAACGGAAAGCUCCACGAGUCCUUAU
..((..(((((((((....))))))..(((((((((....-....)))))..----------.((((((....))-------------)))).))))))).))............ ( -39.60)
>DroSim_CAF1 47379 91 + 1
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAA-CAUUCGGCCAA----------CUUCGGCUCCGGC-------------CGAACGGAAAGCUCCACGAGUCCUUAU
..((..(((((((((....))))))..(((((((((....-....)))))..----------.((((((....))-------------)))).))))))).))............ ( -37.10)
>DroEre_CAF1 49359 83 + 1
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAG-CCUUCGGCCAA----------CUUCGGCUGCGGC-------------CGAACGGAAAGCU--------CCUUAU
.(((((((.((.((((((((...))))))))(((((....-....)))))..----------.....)).)))))-------------))...(((....)--------)).... ( -37.20)
>DroYak_CAF1 51894 101 + 1
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAA-CCUUCGGCCAAAUUCGGAUGACUUCGGCUACGGC-------------CGAACGGAAAGCUCCGCGACUCCUUAU
..((((((.((((((....))))))(((((((((((....-....))))).............((((((....))-------------)))).))))))....))))))...... ( -42.40)
>DroAna_CAF1 47140 99 + 1
---CUUGCUGCAGGGAAAGCUCU---AUUCCGGCCGUAAAAUGUUCGGCUCA----------GUUCGGCUCCGGCUACGACAGCGAGUCCGGCGGAAAGCUCUCUGACUUCUUAU
---.......((((((..(((..---.(((((((((.........))))...----------..(((((((..(((.....)))))).))))))))))))))))))......... ( -29.70)
>consensus
ACGGUUGCUGCAGGGAAAGCUCUGCUUUUCCGGCCGUAAA_CAUUCGGCCAA__________CUUCGGCUCCGGC_____________CGAACGGAAAGCUCCACGACUCCUUAU
......(((((((((....))))))..(((((((((.........)))))..............(((....)))...................)))))))............... (-23.81 = -24.00 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:35 2006