Locus 5487

Sequence ID 3L_DroMel_CAF1
Location 15,005,212 – 15,005,307
Length 95
Max. P 0.586324
window8678

overview

Window 8

Location 15,005,212 – 15,005,307
Length 95
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -17.17
Consensus MFE -12.12
Energy contribution -14.23
Covariance contribution 2.11
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.586324
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15005212 95 - 23771897
AAAACUUUAUUAACACGGUAUUAACACGGUAGUGUUAA-----------CCCCUAAAAAUUAUUUCAAUGCUGUGACUGUUUCCAAAAAUUGUUUCCGUAAACAAA
.............((((((((((((((....)))))).-----------..................))))))))..............((((((....)))))). ( -14.70)
>DroSec_CAF1 23435 103 - 1
AAAACUUCAUUAAA---CUAUUCUUACGGUAGUGUUAAUUUCUAAAAAGCCCCUAGAAAUUAAUUCAAUGCUGUGACUGUUUCCCAAAUUUGUUUCCGUAAACAAA
..............---......((((((((..(((((((((((.........)))))))))))....))))))))............(((((((....))))))) ( -18.40)
>DroSim_CAF1 22471 103 - 1
AAAACUUCAUUAAA---CUAUUCUUACGGUAGUGUUAAUUUCUAACAAGCCCCUAGAAAUUAAUUCAAUGCUGUGACUGUUUCCCAAAUUUGUUUCCGUAAACAAA
..............---......((((((((..(((((((((((.........)))))))))))....))))))))............(((((((....))))))) ( -18.40)
>consensus
AAAACUUCAUUAAA___CUAUUCUUACGGUAGUGUUAAUUUCUAA_AAGCCCCUAGAAAUUAAUUCAAUGCUGUGACUGUUUCCCAAAUUUGUUUCCGUAAACAAA
........................(((((((..(((((((((((.........)))))))))))....)))))))..............((((((....)))))). (-12.12 = -14.23 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:33 2006