Locus 5486

Sequence ID 3L_DroMel_CAF1
Location 15,005,033 – 15,005,131
Length 98
Max. P 0.584609
window8677

overview

Window 7

Location 15,005,033 – 15,005,131
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 93.20
Mean single sequence MFE -28.35
Consensus MFE -24.03
Energy contribution -24.20
Covariance contribution 0.17
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.584609
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15005033 98 + 23771897
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUUCCACGCGGGAGAUCGAAACAGCGAGGAAUCUUGAAAUCA
.................((((((((.((((((((((((....))))).)))))))((((((....))))))(((......)))))))))))....... ( -28.60)
>DroSec_CAF1 23256 98 + 1
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUGCCACGCGGGAGAUCGAAACAGCGAGGAAUCUUGGAAUCA
(((((((((.....))))(((((((.((((((((((((....))))).)))))))(((.((....)).)))(((......)))))))))))))))... ( -30.20)
>DroSim_CAF1 22292 98 + 1
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUGCCACGCGGGAGAUCGAAACAGCGAGGAAUCUUGGAAUCA
(((((((((.....))))(((((((.((((((((((((....))))).)))))))(((.((....)).)))(((......)))))))))))))))... ( -30.20)
>DroEre_CAF1 22210 98 + 1
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUGCCGGGCGGGAGAUCGACACAGCGAGGAAUCCUAGAAUCA
.(((.((((.....)))).(((...(((((((((((((....))))).))))))))..)))))).((((..(((......)))....))))....... ( -29.20)
>DroYak_CAF1 24762 98 + 1
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUGCCGGGCGGGAGAUCGAAACAGCGAGGAAUCUCCGAACCA
.....((((.....)))).(((...(((((((((((((....))))).))))))))..)))((...((((((((......)))....)))))...)). ( -30.70)
>DroAna_CAF1 20728 98 + 1
UUCCACUUUAAACUGAAGAGGUUCUGCACUUGAGGCUGUAUUCAUUCAUGAAGUGUCUGCUAGGCGGGAGACCAACACAGCAAGGAUUCUCGAAAUCA
.(((........((.(((.(......).))).))(((((.((((....))))(((((.....)))((....)).)))))))..)))............ ( -21.20)
>consensus
UUCCACUUUAAACUGAAGAGGUUCUGCACUUCAGGAUGUAUUCAUUCAUGAAGUGUCUGCCACGCGGGAGAUCGAAACAGCGAGGAAUCUUGGAAUCA
.................(((((((((((((((((((((....))))).))))))((((.((....)).)))).......))..))))))))....... (-24.03 = -24.20 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:32 2006