| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,004,533 – 15,004,634 |
| Length | 101 |
| Max. P | 0.747053 |
| Location | 15,004,533 – 15,004,634 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.04 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.32 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.747053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15004533 101 - 23771897 CUUUUUCAGAUUAUUAAGUUUGGAUUAUAACAAAACGUUUCCCGGAGCUUUGAAGCUUUUGAAGCUUUAUUGGGGGACUCCUUUCAACACAAUUUCAGGGU ....((((((((....))))))))............((..((((((((((..(.....)..))))))...))))..))((((..............)))). ( -22.74) >DroSec_CAF1 22757 100 - 1 AGUUUUCAGGCCAUUAAGUUUGGAUUAUUACAAAACGUUCCCCAAAGCUUUGAAGCUU-UAAAGCUUUAUAGGGGAACUCCUUUCAAAUCAAUUUCAGGGU ....(((((((......)))))))............(((((((((((((((((....)-)))))))))...)))))))((((..............)))). ( -26.14) >DroSim_CAF1 21798 101 - 1 AGUUUUCAGGCCAUUAAGUUUGCAUUAUUACAAAACGUUCCCCAGAGCUUCGAAGCUUUUGAAGCUUUAUGGGGGAACUCCUUUCAAAUCAAUUUCAGGGU .........(((.....((((...........))))(((((((.(((((((((.....)))))))))....)))))))....................))) ( -27.10) >DroEre_CAF1 21709 100 - 1 AGUUUUCAGGACAUUAAGUUUGGAUUAUUAGAAAGCGUGCGCCAGAGCUUCAAAGCUUUUGAAGCUUUAUGGGGGA-CUCCUUUCAACUCAAUUUCAGGGU (((..((..(((.....)))..))..))).(((((.((.(.((((((((((((.....)))))))))..))).).)-)..))))).((((.......)))) ( -27.10) >DroYak_CAF1 24265 97 - 1 AGUUUUCAGGCCAUUAAGUUUGGAGUAUUACAAAGUUU----CAAAGCUUCAAAGCUUUUGAAGCUUUUUGGGGGAAGUCCUUUCAACUCAAUUUCAGGGU .........(((...((((...((((.....(((((((----(((((((....))).))))))))))).((..((.....))..)))))).))))...))) ( -24.00) >consensus AGUUUUCAGGCCAUUAAGUUUGGAUUAUUACAAAACGUUCCCCAGAGCUUCGAAGCUUUUGAAGCUUUAUGGGGGAACUCCUUUCAACUCAAUUUCAGGGU ....(((((((......)))))))............(((((((((((((((((.....))))))))))...)))))))((((..............)))). (-19.16 = -19.32 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:31 2006