Locus 5483

Sequence ID 3L_DroMel_CAF1
Location 14,990,169 – 14,990,269
Length 100
Max. P 0.559332
window8672

overview

Window 2

Location 14,990,169 – 14,990,269
Length 100
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 86.40
Mean single sequence MFE -37.64
Consensus MFE -25.68
Energy contribution -27.04
Covariance contribution 1.36
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.68
SVM decision value 0.05
SVM RNA-class probability 0.559332
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14990169 100 + 23771897
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCAGCUGCUUAUUUGUGCGCAAAAACAGCACAAAAGUGGCAAUGGUGACGGUUG----------------
((((((((((.(((.((((((...(((......)))))))))))))))))).)))).(((((((.........))))))).((.((....)).)).....---------------- ( -34.40)
>DroSec_CAF1 8490 112 + 1
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCAGCUGCUUAUUUGUGCGCAAAAACGGCACAAAAGUGGCAAUGGUGACGGUUGGU----CACCGAAAGG
....((((((.(((.((((((...(((......))))))))))))))))))((((..(((((((.(......))))))))...)))).(((((((.....))----)))))..... ( -41.90)
>DroSim_CAF1 7444 112 + 1
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCAGCUGCUUAUUUGUGCGCAAAAACGGCACAAAAGUGGCAAUGCUGACGGUUGGU----CACCGAAAGG
.(((((((((.(((.((((((...(((......))))))))))))))))))((((..(((((((.(......))))))))...))))..)))(((.....))----).((....)) ( -40.60)
>DroEre_CAF1 7477 110 + 1
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCGGCUGCUUCA-GCUGCGCA-AAACGAGACAAAAGUGGCAAUGGUGACGCUUGGU----UACCGAAAGG
..((((((((.((..((((((...(((......)))))))))(((....)))))))))-)).))((.-..((.........)).))..(((((((.....))----)))))..... ( -35.60)
>DroYak_CAF1 8730 107 + 1
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCGGCUGCUUAUUUGUGCGCAAAAACGAAACAAAAGUGGCAAUGG-----CUUGGUCACCG----AAAGG
.(((.......))).(((((.((((((((.(((..((((((.(((....))).))).(((((.((......))..)))))....))).)))-----.))))))))))----))).. ( -35.70)
>consensus
GAGCGCUGAAAGCUAUUUUGCGUGGCCAGUCCAGGUGCAAGAGGCUUCAGCUGCUUAUUUGUGCGCAAAAACGGCACAAAAGUGGCAAUGGUGACGGUUGGU____CACCGAAAGG
....((((((.(((.((((((...(((......))))))))))))))))))((((..(((((((.........)))))))...))))............................. (-25.68 = -27.04 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:27 2006