Locus 5481

Sequence ID 3L_DroMel_CAF1
Location 14,988,028 – 14,988,148
Length 120
Max. P 0.671260
window8670

overview

Window 0

Location 14,988,028 – 14,988,148
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.76
Mean single sequence MFE -21.55
Consensus MFE -9.97
Energy contribution -13.36
Covariance contribution 3.39
Combinations/Pair 1.09
Mean z-score -1.90
Structure conservation index 0.46
SVM decision value 0.29
SVM RNA-class probability 0.671260
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14988028 120 - 23771897
UUAAGCUCUGCUCCUAAAAUCAAUACACAUUUUAAGCUAAUCAUACUCAAUUGGCUUCGAGUUCCUGCCUCUGUGCUUUUGCACAUCUUUAUAAGAUUCCCAAGAAUCAUAGGAGUCUAA
.........(((((((............((((.((((((((........)))))))).)))).........(((((....))))).........(((((....))))).))))))).... ( -27.20)
>DroSec_CAF1 6290 111 - 1
UUAAGCUCUGCUCCUAAAAUCAAUACACAUUUUAAGCUAAUCAUACUCAAUUGGUUUCGAGUUCCUGCCCCUGUGCUUUUGCACAUCUUUAUAA---------GAAUCAUAGGAGUCUAA
.........(((((((............((((.((((((((........)))))))).)))).........(((((....))))).........---------......))))))).... ( -21.10)
>DroSim_CAF1 5325 120 - 1
UUAAGCUCUGCUCCUAAAAUCAAUACACAUUUUAAGCUAAUCAUACUCAAUUGGUUUCGAGUUCCUGCCCCUGUGCUUUUGCACAUCUUUAUAAGAUUCCCAAGAAUCAUAGGAGUCUAA
.........(((((((............((((.((((((((........)))))))).)))).........(((((....))))).........(((((....))))).))))))).... ( -24.80)
>DroEre_CAF1 5729 114 - 1
UUAAGCU-UGCUCCCAAAAUCAAUAUACAUUUUAAGCCACCCACACUCAAUUGGCUUAUUGUUCCUGCCGCCGAGCUUUU----AUCCUUAUGCAUUUCUUGGGAAUCG-AGGAGUCUUA
.....((-((.((((((...............(((((((............)))))))..((((........))))....----...............))))))..))-))........ ( -20.00)
>DroYak_CAF1 6936 100 - 1
UUAAGCUCUGCUCCUAAAAUCAAUAUAAAUUCUAAGCUGCCCACACUCAAU--GCUU-UUGU-------------AUUGC----AUCUUUAUACAUUUCAUAGGAAUAGUAAGAGUCUUA
.(((((((((((((((.......((((((.....((.((....))))((((--((..-..))-------------)))).----...)))))).......)))))...)).)))).)))) ( -14.64)
>consensus
UUAAGCUCUGCUCCUAAAAUCAAUACACAUUUUAAGCUAAUCAUACUCAAUUGGCUUCGAGUUCCUGCCCCUGUGCUUUUGCACAUCUUUAUAAAAUUCCCAAGAAUCAUAGGAGUCUAA
.........(((((((............((((.((((((((........)))))))).))))..........((((....)))).........................))))))).... ( -9.97 = -13.36 +   3.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:25 2006