| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,981,940 – 14,982,043 |
| Length | 103 |
| Max. P | 0.960097 |
| Location | 14,981,940 – 14,982,043 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.07 |
| Mean single sequence MFE | -34.75 |
| Consensus MFE | -22.18 |
| Energy contribution | -22.05 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14981940 103 + 23771897 AGUAACGGGCGGAUUUCAAUUAAAACACGGCCGGGCAUUAAACCGGGGC----UAUUGCCCGGAAUUAGCAGCCGGAGCUGUUAAAAG-------CGGCGCAGACCA---CCGGUUU .((..(((.((..(((......)))..)).))).))...(((((((((.----..(((((((...((((((((....))))))))...-------))).)))).)).---))))))) ( -37.80) >DroPse_CAF1 993 113 + 1 GGUGGAGAGGAAUUUUCAAUUAAAACAGGGCCG-ACAUAAAAUGACGACAUAAAAUUGGCUCGAAUUAGCGGUUAAAGCCGUUAAAAAAAGGAGACGGCCUCUUCCU---UCAGUUG ((.(((((((..(((((..........((((((-(......(((....)))....)))))))...((((((((....)))))))).....)))))...)))))))))---....... ( -31.80) >DroSec_CAF1 212 103 + 1 AGUGGCGUGGGGAUUUCAAUUAAAACACGGCCGGGCAUUAAACCGGGGC----UAUUGCCCGGAAUUAGCAGCCGGAGCUGUUAAAAG-------CGGCGCAGACCA---CCGGUUU ..(((((((..(((....)))....))).))))......(((((((((.----..(((((((...((((((((....))))))))...-------))).)))).)).---))))))) ( -36.10) >DroEre_CAF1 192 94 + 1 -------CGGGGGAUUCAAUUAAAACUCGGCCG-GCAAUAAACCGUGGC----UAUUGCCCGGAAUUAGCAGCCGGAGCUGUUA-AAG-------CGGCGCAGACCU---UCGGUUU -------((((((.................(((-((..(((.(((.(((----....))))))..)))...))))).(((((..-..)-------)))).....)))---))).... ( -33.50) >DroYak_CAF1 201 106 + 1 CGGGGAGUGGGGAUUUCAAUUAAAACACGGCCGGGCAUUAAACCGGGGC----UAUUGCCCGGAAUUAGCAGCCGUAGCUGUUAAAAG-------CGGCGCAGACCACCGCCGGUUU (((.(.((((................((((((((........)))((((----....))))..........))))).(((((.....)-------)))).....))))).))).... ( -39.70) >DroAna_CAF1 239 100 + 1 GAUGGUGGGAAUUUUUCAAUUAAAACACGGCCG-ACAUAAAACCA-GGC----UAUUGCCCGGAAUUAGCAGUCCG-GCUGUUAAAAA-------CGGCGGCUGCCA---ACGGUUA ....(((..((((....))))....)))(((((-........((.-(((----....))).)).....((((.(((-.((((.....)-------))))))))))..---.))))). ( -29.60) >consensus AGUGGAGGGGGGAUUUCAAUUAAAACACGGCCG_GCAUUAAACCGGGGC____UAUUGCCCGGAAUUAGCAGCCGGAGCUGUUAAAAG_______CGGCGCAGACCA___CCGGUUU .............................((((.........(((.(((........))))))..((((((((....))))))))..........))))..(((((......))))) (-22.18 = -22.05 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:24 2006