Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,577,868 – 1,577,988 |
Length | 120 |
Max. P | 0.881538 |
Location | 1,577,868 – 1,577,988 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -49.84 |
Consensus MFE | -47.50 |
Energy contribution | -46.50 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.28 |
Structure conservation index | 0.95 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1577868 120 + 23771897 GGACCAGCGCCUGCUUCAUAGACGCCUCAUCGCUGAGGGACGAGGAUGAGGUGUUGUCCUUCCCCAGCCUAGAUGGCCACGGCCAGGAGGAAGAAGUCGGGCAAGAGGCGACUGGCGACG .(.(((((((((.((((...(((.((((...((((.((((..((((..(....)..)))))))))))).....((((....)))).)))).....)))..).)))))))).))))).... ( -52.40) >DroSec_CAF1 22059 120 + 1 GGACCAGCGCCUGCUUCAUAGACGCCUCAUCGCUGAGGGACGAGGAUGAGGUGCUGUCCUUCCCCAGCCUAGAUGGCCACGGCCAGGAGGAAGAAGUCGGACAAGAGGCGACUGGCGACG .(.(((((((((.(((....(((.((((...((((.((((..(((((........))))))))))))).....((((....)))).)))).....)))....)))))))).))))).... ( -51.40) >DroSim_CAF1 22435 120 + 1 GGACCAGCGCCUGCUUCAUAGACGCCUCAUCGCUGAAGGACGAGGAUGAGGUGCUGUCCUUCCCCAGCCUAGAUGGCCACGGCCAGGAGGAAGAAGUCGGACAAGAGGCGACUGGCGACG .(.(((((((((.(((...((.(((((((((.((........)))))))))))))((((..(..(..(((...((((....))))..)))..)..)..)))))))))))).))))).... ( -50.40) >DroEre_CAF1 29221 120 + 1 GAACCAGCGCCUGCUUCAUAGACGCCUCAUCGCUGAGGGACGAGGACGAGGUGCUGUCCUUCCCCAGUCUAGAUGGUCACGGCCAGGAGGAAGAAGUCGGGCAAGAGGCGAUUGGCGACG ...(((((((((.((((...(((.((((...((((.((((..((((((......)))))))))))))).....((((....)))).)))).....)))..).)))))))).))))..... ( -47.00) >DroYak_CAF1 23158 120 + 1 GAACCAGUGCCUGCUUCAUAGACGCCUCCUCGCUGAGGGACGAGGACGAGGUGCUGUCCUUCCCCAGUCUAGAUGGUCACGGUCAGGAGGAAGAAGUCGGGCAAGAGGCGACUGGCGACG ...(((((((((.((((...(((.((((((.((((.(((..(((((((......))))))).))).(.((....)).).)))).)))))).....)))..).))))))).)))))..... ( -48.00) >consensus GGACCAGCGCCUGCUUCAUAGACGCCUCAUCGCUGAGGGACGAGGAUGAGGUGCUGUCCUUCCCCAGCCUAGAUGGCCACGGCCAGGAGGAAGAAGUCGGGCAAGAGGCGACUGGCGACG ...(((((((((.(((....(((.((((...((((.((((..((((((......)))))))))))))).....((((....)))).)))).....)))....)))))))).))))..... (-47.50 = -46.50 + -1.00)
Location | 1,577,868 – 1,577,988 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -47.02 |
Consensus MFE | -40.44 |
Energy contribution | -41.52 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.03 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1577868 120 - 23771897 CGUCGCCAGUCGCCUCUUGCCCGACUUCUUCCUCCUGGCCGUGGCCAUCUAGGCUGGGGAAGGACAACACCUCAUCCUCGUCCCUCAGCGAUGAGGCGUCUAUGAAGCAGGCGCUGGUCC ....(((((.((((((((....((((((((((.((.((((.(((....)))))))))))))))).....(((((((((........)).))))))).)))....))).)))))))))).. ( -48.30) >DroSec_CAF1 22059 120 - 1 CGUCGCCAGUCGCCUCUUGUCCGACUUCUUCCUCCUGGCCGUGGCCAUCUAGGCUGGGGAAGGACAGCACCUCAUCCUCGUCCCUCAGCGAUGAGGCGUCUAUGAAGCAGGCGCUGGUCC ....(((((.((((((((((((..((((..(((..((((....))))...)))..))))..)))).((.(((((((((........)).))))))).)).....))).)))))))))).. ( -52.00) >DroSim_CAF1 22435 120 - 1 CGUCGCCAGUCGCCUCUUGUCCGACUUCUUCCUCCUGGCCGUGGCCAUCUAGGCUGGGGAAGGACAGCACCUCAUCCUCGUCCUUCAGCGAUGAGGCGUCUAUGAAGCAGGCGCUGGUCC ....(((((.((((((((((((..((((..(((..((((....))))...)))..))))..)))).((.(((((((((........)).))))))).)).....))).)))))))))).. ( -52.00) >DroEre_CAF1 29221 120 - 1 CGUCGCCAAUCGCCUCUUGCCCGACUUCUUCCUCCUGGCCGUGACCAUCUAGACUGGGGAAGGACAGCACCUCGUCCUCGUCCCUCAGCGAUGAGGCGUCUAUGAAGCAGGCGCUGGUUC ....((((..(((((((((((.((........))..)))(((((((.((..(.((((((((((((........)))))..)))).))))...)).).))).)))))).))))).)))).. ( -37.70) >DroYak_CAF1 23158 120 - 1 CGUCGCCAGUCGCCUCUUGCCCGACUUCUUCCUCCUGACCGUGACCAUCUAGACUGGGGAAGGACAGCACCUCGUCCUCGUCCCUCAGCGAGGAGGCGUCUAUGAAGCAGGCACUGGUUC ....((((((.(((((((....(((..(((((((((((.......((.......))(((((((((........)))))..)))))))).))))))).)))....))).)))))))))).. ( -45.10) >consensus CGUCGCCAGUCGCCUCUUGCCCGACUUCUUCCUCCUGGCCGUGGCCAUCUAGGCUGGGGAAGGACAGCACCUCAUCCUCGUCCCUCAGCGAUGAGGCGUCUAUGAAGCAGGCGCUGGUCC ....(((((.((((((((....((((((((((.((.((((...........))))))))))))).....(((((((((........)).))))))).)))....))).)))))))))).. (-40.44 = -41.52 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:06 2006