Locus 5479

Sequence ID 3L_DroMel_CAF1
Location 14,981,300 – 14,981,392
Length 92
Max. P 0.796768
window8668

overview

Window 8

Location 14,981,300 – 14,981,392
Length 92
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 91.46
Mean single sequence MFE -15.53
Consensus MFE -13.90
Energy contribution -13.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.90
SVM decision value 0.60
SVM RNA-class probability 0.796768
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14981300 92 + 23771897
GUGUGUGUGUGUGCUAUUUUCCCAAGAGGUUGCACAAAAUGCACAACAAGAACAAAAAUCAAACCGUUCAACCAAUUACCCACAAAU---------ACUCA
((((((...(((((.(((((.....))))).)))))..)))))).....((((............))))..................---------..... ( -17.40)
>DroSec_CAF1 33299 89 + 1
---UGUGUGUGUGCUAUUUUCCCAAGAGGUUGCACGAAAUGCACAACAAGAACAAAAAUCAAACCGUUCAACCAAUUACCCACAAAU---------ACUCA
---(((((.(((((.(((((.....))))).)))))....)))))....((((............))))..................---------..... ( -14.20)
>DroSim_CAF1 34420 89 + 1
---UGUGUGUGUGCUAUUUUCCCAAGAGGUUGCACAAAAUGCACAACAAGAACAAAAAUCAAACCGUUCAACCAAUUACCCACAAAU---------ACUCA
---(((((.(((((.(((((.....))))).)))))....)))))....((((............))))..................---------..... ( -14.90)
>DroEre_CAF1 33421 100 + 1
-UGUGUGUGUGUGCUGUUUUCCCAAGAGGUUGCACCAAAUGCACAACAAGAACAAACAUCAAACCGUUCAACCAAUUACCCACAAAUACUCAUAAUACUCA
-(((((((..((((...((((....))))..))))...)))))))....((((............))))................................ ( -15.60)
>consensus
___UGUGUGUGUGCUAUUUUCCCAAGAGGUUGCACAAAAUGCACAACAAGAACAAAAAUCAAACCGUUCAACCAAUUACCCACAAAU_________ACUCA
...(((((((((((...((((....))))..))))...)))))))....((((............))))................................ (-13.90 = -13.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:23 2006