Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,978,543 – 14,978,633 |
Length | 90 |
Max. P | 0.642393 |
Location | 14,978,543 – 14,978,633 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -17.28 |
Consensus MFE | -16.18 |
Energy contribution | -16.68 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -0.95 |
Structure conservation index | 0.94 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14978543 90 - 23771897 AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80) >DroSec_CAF1 30661 90 - 1 AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80) >DroSim_CAF1 31669 90 - 1 AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80) >DroEre_CAF1 30782 90 - 1 AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80) >DroYak_CAF1 32524 90 - 1 AAGACAAAGGCUCCUACUUCUACGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG-C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))...-. ( -17.80) >DroAna_CAF1 29967 85 - 1 AAGACAAAGGCA------UCUCCGCCCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUAGUAGUC .((((((((((.------.....)))....((((.........))))......)))))))............(((..(....)..)))... ( -14.70) >consensus AAGACAAAGGCUUCUACUUCUCCGCUCAACCUCAAGCUGCAUAUGAGUUAAUAUUUGUCUAGUUUUUGAACAUGCCGCUUUUGUCUCAG_C .((((((((((............(((........))).(((((..(((....)))..)...(((....))))))).))))))))))..... (-16.18 = -16.68 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:22 2006