| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,971,696 – 14,971,790 |
| Length | 94 |
| Max. P | 0.692748 |
| Location | 14,971,696 – 14,971,790 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -11.67 |
| Energy contribution | -13.17 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14971696 94 + 23771897 UGGGG---AGUCGCAUAUCAAG-GGGUCUCCAAUUUCCCGACACCCACUUGUAAGAUCUA---ACUCUCUAAUCUUUCGCACACAAAUGAGAGAAAGAG--AG ..(((---.((((.....)..(-(((.........))))))).)))..............---.((((((..(((((((........))))))).))))--)) ( -23.90) >DroPse_CAF1 28657 87 + 1 GAGGGGGGAUUCGGAUAUCAAUUGGGUCUCCUAUUUCCCGACGCCCACUUGAAAGAUCUCGUCUCUCUAUAGUCUCUUCCACACAAA---------------- ..((((((((..((((.((((.(((((.((.........)).))))).))))...)))).))))))))...................---------------- ( -22.90) >DroSec_CAF1 23835 99 + 1 CGGGGUGGAGUUGGAUAUCAAG-GGGUGUCCAAUUUCCCGACACCCACUUGUAGAAUCUA---ACUCUCUAAUCUUUCGCAGACAAAAGAGAGAAAGAGAGAG ..(((((((((((((((((...-.)))))))))))).....)))))..............---.((((((..((((((..........))))))...)))))) ( -34.70) >DroSim_CAF1 24412 99 + 1 CGGGAGGUUGUCGGAUAUCAAG-GGGUCUCCAAUUUCCCGACACCCACUUGUAAGAUCUA---ACUCUCUAAUCUUUCACAGACAAAAGAGAGAAAGAGAGAG ((((((((((..((((......-..)))).))))))))))....................---.((((((..((((((..........))))))...)))))) ( -29.00) >DroEre_CAF1 23607 88 + 1 UGGGG---AGUCGGAUAUCAAG-GGGUCUCCAAUUUCCCGACACCCACUUGUAAGAUCUA---ACUCUCUAAUCUUUCGCACACGGGAGAGAGCA-------- (((((---(((..(((..((((-((((.((.........)).)))).))))....)))..---)))))))).((((((.(....).))))))...-------- ( -32.00) >DroYak_CAF1 24471 86 + 1 UGGGG---AGUCGUAUAUCAAG-GGGUCUCCAAUUUCCCGACACCCACUUGUAAGAUCUA---ACUCUCUAAUCUUUGGCACACCGGAGAGAG---------- (((((---(((.((....((((-((((.((.........)).)))).))))....))...---)))))))).(((((((....)))))))...---------- ( -25.50) >consensus UGGGG___AGUCGGAUAUCAAG_GGGUCUCCAAUUUCCCGACACCCACUUGUAAGAUCUA___ACUCUCUAAUCUUUCGCACACAAAAGAGAGAA________ .((((.......((((..((((.((((.((.........)).)))).))))....))))......))))...(((((((....)))))))............. (-11.67 = -13.17 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:19 2006