Locus 5475

Sequence ID 3L_DroMel_CAF1
Location 14,971,240 – 14,971,358
Length 118
Max. P 0.568962
window8663

overview

Window 3

Location 14,971,240 – 14,971,358
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 91.27
Mean single sequence MFE -30.96
Consensus MFE -25.60
Energy contribution -26.04
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.33
Structure conservation index 0.83
SVM decision value 0.07
SVM RNA-class probability 0.568962
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14971240 118 - 23771897
ACACACAUGCACGAAGUGCGUUCCAUUCAGGGGCGUAGUCGAUAGAAGGCACCCUACAAUUCGGAAAUUAACAUAUGAUUAAAUAGAUGGGCGGAUAUACCUAUAAGUGUCCUAUCAA
............((..((((((((.....)))))))).))(((((..(((((((........))......................(((((........)))))..)))))))))).. ( -26.60)
>DroSec_CAF1 23393 118 - 1
ACACACAUGCACGACGUGCGUUCCAACCAGAGGCGUAGUCGAUAGAAGGUACCCUACAAUUCGGAAAUUAACAUGUGAUUAAAUAGAUGGGCGGAUACACCUAUAAGUGUCCUAUCAA
...((((((..((((.(((((..(.....)..)))))))))...(.(((...))).)..............))))))........((((((.....((((......)))))))))).. ( -29.60)
>DroSim_CAF1 23957 118 - 1
ACACACAUGCACGAAGUGCGUUCCAAUCAGGGGCGUAGUCGAUAGAAGGUACCCUACAAUUCGGAAAUUAACAUGUGAUUAAAUAGAUGGGCGGAUACACCUAUAAGUGUCCUAUCAA
...((((((..(((..((((((((.....)))))))).)))...(.(((...))).)..............))))))........((((((.....((((......)))))))))).. ( -31.10)
>DroEre_CAF1 23153 118 - 1
ACACACAUGCAAGAAGUGCGUACCGAACAGGGGCGUAGUCGAUAGAGGGUACCCUGCAAUUCGGAAAUAAGCAUGUGAUUAAAUAGAGGGGCGGACACACUUUUAAGUGUCCUAUCAA
...(((((((......((((..((.....))..)))).((((..((((....))).)...))))......)))))))...............((((((........))))))...... ( -35.50)
>DroYak_CAF1 24012 118 - 1
ACACACAUGCAAGAAGUGCGUUCCAAGCAGGGGCGUAGUCGAUAGGAGGUACCCUGCAAUUCGGAAAUAAGCAUGUCAUUAAAUAGAUGGGCGGAUGUACUUUUAAGUGUCCUAUCAA
....((((...((((((((((((...((((((......((....)).....)))))).............((..(((........)))..))))))))))))))..))))........ ( -32.00)
>consensus
ACACACAUGCACGAAGUGCGUUCCAAUCAGGGGCGUAGUCGAUAGAAGGUACCCUACAAUUCGGAAAUUAACAUGUGAUUAAAUAGAUGGGCGGAUACACCUAUAAGUGUCCUAUCAA
...((((((.......((((((((.....)))))))).((((..(.(((...))).)...)))).......))))))........((((((.....((((......)))))))))).. (-25.60 = -26.04 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:18 2006