Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,970,060 – 14,970,160 |
Length | 100 |
Max. P | 0.770503 |
Location | 14,970,060 – 14,970,160 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -20.77 |
Energy contribution | -21.00 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.26 |
Mean z-score | -1.58 |
Structure conservation index | 0.64 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14970060 100 + 23771897 ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUCGGCUCCACGGGUGAUCGCUGCGCGAAAA----------------AAGACAAAAUAUAUAC .(((.(((((....(((.(((((.(.....((....))).))))))))((.((.(((......))).)).))))))))))....----------------................ ( -29.60) >DroSec_CAF1 22233 101 + 1 ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGCCUUCCCGACCAGUCGGCUCCACGGGUGACCGCUGCGAGAAAAG---------------AAGACAAAAUAUAUAC ...(((((((..((((((..((((.......(((......))).........)))).)))))).((....)))))))))......---------------................ ( -33.39) >DroSim_CAF1 22202 101 + 1 ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUAGGCUCCACGGGUGACCGCUGCGAGAAAAG---------------AAGACAAAAUAUAUAC ..(((((.(...(((((.....)))))...).)))))...((((((((........))((((((((....))).)).)))....)---------------)))))........... ( -33.00) >DroEre_CAF1 21922 105 + 1 AUGUUGCGGCAAUGGGGCAGCACUCCGAAUUGGCAGCAGCGUCUGCCCGACCAGUCGGCUCCACGGGUGACCGCUGCAACAAAAAGG-----------AAAAACCAAAAUACAUAC .(((((((((..((((((.............(((((......)))))(((....))))))))).((....)))))))))))....((-----------.....))........... ( -40.30) >DroYak_CAF1 22771 116 + 1 ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAGCAGCGUCUGCCCGACCAGUCGGCUCCACGGGUGACCGCUGCAAGAAGAGGAAACAGAAAACAGAAAACCAAAAUACAUAC ...(((((((..((((((..((((.......(((((......))))).....)))).)))))).((....))))))))).....(....).......................... ( -38.20) >DroAna_CAF1 19501 88 + 1 GCAUUCCGACAAUGAGCCAACACCCCGAACUGGCAGCAUCGUCUUCCCGACCAGUCCGCUCCACGGGCGACCGCUGUGAAUAAUAGG--------------A-------------- ....((((((.(((.((((...........))))..))).))).......(((((.((((.....))))...)))).).......))--------------)-------------- ( -19.90) >consensus ACGUUGCGGCAAUGGGGCAGGACUCCAAAUUGGCAACAGCGUCUUCCCGACCAGUCGGCUCCACGGGUGACCGCUGCGAGAAAAG_______________AAGACAAAAUAUAUAC ...(((((((..(((((.....)))))....((..((..(((....((((....))))....))).))..)))))))))..................................... (-20.77 = -21.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006