Locus 5473

Sequence ID 3L_DroMel_CAF1
Location 14,961,114 – 14,961,219
Length 105
Max. P 0.500000
window8661

overview

Window 1

Location 14,961,114 – 14,961,219
Length 105
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -23.21
Consensus MFE -14.30
Energy contribution -15.38
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14961114 105 - 23771897
GGCUGGGUUCACAUUAUGAGCAGCAACUGUU-UGUUCUAAUUUAAACCUUUUAAGCACUUUGUUUAUAAUGCUAGGUAUGGGGAAUUUUCUUUUUCCCAUGUUUAC-----------
(((.(((((.(.((((.(((((((....).)-))))))))).).)))))..(((((.....)))))....)))(..(((((((((.......)))))))))..)..----------- ( -24.90)
>DroSec_CAF1 13377 105 - 1
GGCUGGGUUCACAUUAUGAACAGCAACUGUU-UGUUCUAAUUUAAACCUUUUAAGCACUUUGUUUAUAAUGCUAGGUAUGGGGAAUUUUCUUUUUCCCAUGUUUAC-----------
(((.(((((.(.((((.(((((((....).)-))))))))).).)))))..(((((.....)))))....)))(..(((((((((.......)))))))))..)..----------- ( -24.90)
>DroSim_CAF1 13365 106 - 1
GGCUGGGUUCACAUUAUGAGCAGCAACUGUUUUGUUCUAAUUUAAACCUUUUAAGCACUUUGUUUAUAAUGCUAGGUAUGGGGAAUUUUCUUUUUCCCAUGUUUAC-----------
(((.(((((.(.((((.((((((........)))))))))).).)))))..(((((.....)))))....)))(..(((((((((.......)))))))))..)..----------- ( -24.60)
>DroEre_CAF1 12940 110 - 1
----UGGCUCCCAUUCUGGGCAGCACCUGUU-UGU--CAAUUUCAACCCUUUAAGCACUUUGUUUAUAAUGUUAGGUAUGGGGAAUUUUCGUUUUCCCAUUUGUACUUCUCAAGCUU
----..((((((.....))).)))....(((-((.--.......(((....(((((.....)))))....)))((((((.(((((........)))))....))))))..))))).. ( -24.70)
>DroYak_CAF1 13663 98 - 1
----UGGUUCACGUUCUGGGCAGCACCUGUU-UGUUUUAAUUUCAACCUUUUAAGCACUUUGUUUAUAAUGUUAGGUAUGGGAAAUUUUCUUUUUC--------------CAAGCUU
----......(((((.(((((((....((((-((.................))))))..))))))).))))).((((.(((((((......)))))--------------)).)))) ( -16.93)
>consensus
GGCUGGGUUCACAUUAUGAGCAGCAACUGUU_UGUUCUAAUUUAAACCUUUUAAGCACUUUGUUUAUAAUGCUAGGUAUGGGGAAUUUUCUUUUUCCCAUGUUUAC___________
...........((((((((((((....((((..(((........)))......))))..)))))))))))).....(((((((((.......)))))))))................ (-14.30 = -15.38 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:16 2006